RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 GPR27Q9NS67 375 aa6.19□□□□□ -1.42
USP3-210ENST00000559192 DEFB108AA8MXU0 73 aa6.19□□□□□ -1.42
USP3-210ENST00000559192 C2CD4DB7Z1M9 353 aa6.19□□□□□ -1.42
USP3-210ENST00000559192 CEBPDP49716 269 aaPredicted RBP6.19□□□□□ -1.42
USP3-210ENST00000559192 LBX1P52954 281 aa6.19□□□□□ -1.42
USP3-210ENST00000559192 CCL7P80098 99 aa6.19□□□□□ -1.42
USP3-210ENST00000559192 TMEM187Q14656 261 aa6.19□□□□□ -1.42
USP3-210ENST00000559192 SNAI3Q3KNW1 292 aa6.19□□□□□ -1.42
USP3-210ENST00000559192 WIPI1Q5MNZ9 446 aaPredicted RBP6.19□□□□□ -1.42
USP3-210ENST00000559192 OR10AD1Q8NGE0 317 aa6.19□□□□□ -1.42
USP3-210ENST00000559192 OR5D13Q8NGL4 314 aa6.19□□□□□ -1.42
USP3-210ENST00000559192 P4HTMQ9NXG6 502 aa6.19□□□□□ -1.42
USP3-210ENST00000559192 VAX2Q9UIW0 290 aa6.19□□□□□ -1.42
USP3-210ENST00000559192 LMO7DNF2Z398 122 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 NDUFA2O43678 99 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 BPIFB3P59826 476 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 ZP4Q12836 540 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 SLC35E4Q6ICL7 350 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 MRGPRFQ96AM1 343 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 HSPB9Q9BQS6 159 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 STRADBQ9C0K7 418 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 ZNF665Q9H7R5 613 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 ZNF430Q9H8G1 570 aaPredicted RBP6.18□□□□□ -1.42
USP3-210ENST00000559192 ZNF355PQ9NSJ1 428 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 TREM2Q9NZC2 230 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 KIAA1456Q9P272 454 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 R4GN57 208 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 A0A0A6YYD4 124 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 SH2D1BO14796 132 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 DEFA4P12838 97 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 SUB1P53999 127 aaKnown RBP eCLIP6.18□□□□□ -1.42
USP3-210ENST00000559192 RPS23P62266 143 aaKnown RBP6.18□□□□□ -1.42
USP3-210ENST00000559192 TMEM252Q8N6L7 170 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 TMEM116Q8NCL8 245 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 OR1L6Q8NGR2 347 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 TMEM204Q9BSN7 226 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 RTN4RQ9BZR6 473 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 WDR61Q9GZS3 305 aaKnown RBP6.18□□□□□ -1.42
USP3-210ENST00000559192 SPTBP11277 2137 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 IGHV4-34P06331 123 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 BCL2P10415 239 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 TBC1D28Q2M2D7 210 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 PAQR4Q8N4S7 273 aaPredicted RBP6.18□□□□□ -1.42
USP3-210ENST00000559192 Q8WTZ3 238 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 KLHDC3Q9BQ90 382 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 LRFN3Q9BTN0 628 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 PLXND1Q9Y4D7 1925 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 TMEM210A6NLX4 147 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 CRXO43186 299 aaPredicted RBP6.18□□□□□ -1.42
USP3-210ENST00000559192 SYNGR2O43760 224 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 TSPAN13O95857 204 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 IGHMP01871 453 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 CYB561P49447 251 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 TCL1AP56279 114 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 PAFAH1B2P68402 229 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 MZT1Q08AG7 82 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 GAB4Q2WGN9 574 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 KHDC3LQ587J8 217 aa6.18□□□□□ -1.42
USP3-210ENST00000559192 NEIL1Q96FI4 390 aaPredicted RBP6.18□□□□□ -1.42
USP3-210ENST00000559192 ALKBH7Q9BT30 221 aaPredicted RBP6.18□□□□□ -1.42
USP3-210ENST00000559192 OR4C46A6NHA9 309 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 CORTO00230 105 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 ATXN7O15265 892 aaPredicted RBP6.17□□□□□ -1.42
USP3-210ENST00000559192 PAGE4O60829 102 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 ADH4P08319 380 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 CA6P23280 308 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 GCSHP23434 173 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 GPR12P47775 334 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 NMUP48645 174 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 LSM6P62312 80 aaKnown RBP6.17□□□□□ -1.42
USP3-210ENST00000559192 FHL1Q13642 323 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 PLPPR5Q32ZL2 321 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 COX19Q49B96 90 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 SPNS3Q6ZMD2 512 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 FLVCR1-AS1Q8TAF5 88 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 SPAG8Q99932 426 aaPredicted RBP6.17□□□□□ -1.42
USP3-210ENST00000559192 PCGF1Q9BSM1 259 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 ABHD14AQ9BUJ0 271 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 TET1Q8NFU7 2136 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 IGHV3-43A0A0B4J1X8 118 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 IGHV3-43DP0DP04 118 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 NPBWR2P48146 333 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 KLRB1Q12918 225 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 EIF3IQ13347 325 aaKnown RBP6.17□□□□□ -1.42
USP3-210ENST00000559192 VHLLQ6RSH7 139 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 C10orf126Q8N4M7 172 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 AGBL5Q8NDL9 886 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 OR10G8Q8NGN5 311 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 COL25A1Q9BXS0 654 aaPredicted RBP6.17□□□□□ -1.42
USP3-210ENST00000559192 ANGPTL4Q9BY76 406 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 IGSF23A1L1A6 192 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 OOEPA6NGQ2 149 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 C11orf94C9JXX5 98 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 EFEMP2O95967 443 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 HSPB1P04792 205 aaKnown RBP6.17□□□□□ -1.42
USP3-210ENST00000559192 SCTP09683 121 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 ARF6P62330 175 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 RPL11P62913 178 aaKnown RBP6.17□□□□□ -1.42
USP3-210ENST00000559192 IZUMO4Q1ZYL8 232 aa6.17□□□□□ -1.42
USP3-210ENST00000559192 CDCP2Q5VXM1 449 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms