RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PRDM13Q9H4Q3 707 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 UNKLQ9H9P5 680 aaKnown RBP6.16□□□□□ -1.42
VPS13C-206ENST00000558338 MBNL3Q9NUK0 354 aaKnown RBP6.16□□□□□ -1.42
VPS13C-206ENST00000558338 KCNIP1Q9NZI2 227 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 PRELID1Q9Y255 219 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 WIPI2Q9Y4P8 454 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 RTTNQ86VV8 2226 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 TMEM30CPA0ZSE6 113 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 PRR33A8MZF0 331 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 FAM90A26D6RGX4 464 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 SIRPB1O00241 398 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 RHBDL1O75783 438 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 TNFRSF6BO95407 300 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 IFNA5P01569 189 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 EIF2S3P41091 472 aaKnown RBP6.15□□□□□ -1.42
VPS13C-206ENST00000558338 PPT1P50897 306 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 ZNF154Q13106 437 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 ATP1A1-AS1Q5TC04 95 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 TMEM182Q6ZP80 229 aaPredicted RBP6.15□□□□□ -1.42
VPS13C-206ENST00000558338 OR5C1Q8NGR4 320 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 OR10Z1Q8NGY1 313 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 OR2G3Q8NGZ4 309 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 FAM213BQ8TBF2 198 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 BCL2L14Q9BZR8 327 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 EIF5A2Q9GZV4 153 aaKnown RBP6.15□□□□□ -1.42
VPS13C-206ENST00000558338 CXXC4Q9H2H0 198 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 HES4Q9HCC6 221 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 ERRFI1Q9UJM3 462 aaPredicted RBP6.15□□□□□ -1.42
VPS13C-206ENST00000558338 RBM7Q9Y580 266 aaKnown RBP6.15□□□□□ -1.42
VPS13C-206ENST00000558338 WSB1Q9Y6I7 421 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 ZDBF2Q9HCK1 2354 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 FREM1Q5H8C1 2179 aa6.15□□□□□ -1.42
VPS13C-206ENST00000558338 MYO15AQ9UKN7 3530 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 TNFSF12O43508 249 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 LYZL6O75951 148 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 HAND1O96004 215 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 IGKV3-15P01624 115 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 FTH1P19P0C7X4 201 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 LMO1P25800 156 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 ATP6V0CP27449 155 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 SULT1A1P50225 295 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 DYNLT3P51808 116 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 TAS2R30P59541 319 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 TLE4Q04727 773 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 CLINT1Q14677 625 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 RHEBQ15382 184 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 CXorf66Q5JRM2 361 aaPredicted RBP6.15□□□□□ -1.43
VPS13C-206ENST00000558338 AKR1C8PQ5T2L2 129 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 AVPI1Q5T686 147 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 SLC35E4Q6ICL7 350 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 TMEM88Q6PEY1 159 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 CLEC9AQ6UXN8 241 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 C20orf204Q6ZNR8 217 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 TMPRSS7Q7RTY8 843 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 WDR86Q86TI4 376 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 CBLN2Q8IUK8 224 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 TCTEX1D1Q8N7M0 179 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 C15orf54Q8N8G6 183 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 PLPPR1Q8TBJ4 325 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 FAM216AQ8WUB2 273 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 IL1F10Q8WWZ1 152 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 RCC1LQ96I51 464 aaKnown RBP6.15□□□□□ -1.43
VPS13C-206ENST00000558338 SLC35B3Q9H1N7 401 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 SH3BGRL3Q9H299 93 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 HIPK2Q9H2X6 1198 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 KCNJ16Q9NPI9 418 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 PGPEP1Q9NXJ5 209 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 RNF150Q9ULK6 438 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 KCNS2Q9ULS6 477 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 RNF115Q9Y4L5 304 aa6.15□□□□□ -1.43
VPS13C-206ENST00000558338 OOEPA6NGQ2 149 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 AHRRA9YTQ3 701 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 ZNHIT1O43257 154 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 CHST1O43916 411 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 CELA3BP08861 270 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 PSG2P11465 335 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 FOLR2P14207 255 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 KITLGP21583 273 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 NOVA1P51513 510 aaKnown RBP6.14□□□□□ -1.43
VPS13C-206ENST00000558338 CCL11P51671 97 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 HBG1P69891 147 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 HBG2P69892 147 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 PMP22Q01453 160 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 CATR1Q13166 79 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 TESK1Q15569 626 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 SLC25A24Q6NUK1 477 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 TRAT1Q6PIZ9 186 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 CISD2Q8N5K1 135 aaKnown RBP6.14□□□□□ -1.43
VPS13C-206ENST00000558338 CNEP1R1Q8N9A8 125 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 ZNF610Q8N9Z0 462 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 FDCSPQ8NFU4 85 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 OR51H1Q8NH63 302 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 KLF14Q8TD94 323 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-206ENST00000558338 GPR146Q96CH1 333 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 RBMXL1Q96E39 390 aaKnown RBP6.14□□□□□ -1.43
VPS13C-206ENST00000558338 TOLLIPQ9H0E2 274 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 MAGT1Q9H0U3 335 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 TUBA4BQ9H853 241 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 COA4Q9NYJ1 87 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 OR1A1Q9P1Q5 309 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms