RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 HDHD3Q9BSH5 251 aaPredicted RBP10.98□□□□□ -0.65
SHMT2-219ENST00000555563 SLC25A33Q9BSK2 321 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 OR51E2Q9H255 320 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 ZNF696Q9H7X3 374 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 LIN7BQ9HAP6 207 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 CHMP1AQ9HD42 196 aaPredicted RBP10.98□□□□□ -0.65
SHMT2-219ENST00000555563 AK3Q9UIJ7 227 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 OR2F2O95006 317 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 SNRNP70P08621 437 aaKnown RBP10.97□□□□□ -0.65
SHMT2-219ENST00000555563 RANBP1P43487 201 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 REG1BP48304 166 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 VEGFCP49767 419 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 BLCAPP62952 87 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 ZNF816Q0VGE8 651 aaPredicted RBP10.97□□□□□ -0.65
SHMT2-219ENST00000555563 HMGN3Q15651 99 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 C11orf88Q6PI97 169 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 Q6ZS46 218 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 SLC25A48Q6ZT89 311 aaKnown RBP10.97□□□□□ -0.65
SHMT2-219ENST00000555563 MOB1BQ7L9L4 216 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 KLHDC1Q8N7A1 406 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 OR52L2PQ8NGH6 319 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 OR56B1Q8NGI3 324 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 CAPSLQ8WWF8 208 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 ARHGAP5-AS1Q96IT6 56 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 RBM14Q96PK6 669 aaKnown RBP10.97□□□□□ -0.65
SHMT2-219ENST00000555563 PRSS22Q9GZN4 317 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 OR2S2Q9NQN1 319 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 SERTAD4Q9NUC0 356 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 HSF4Q9ULV5 492 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 SSR3Q9UNL2 185 aa10.97□□□□□ -0.65
SHMT2-219ENST00000555563 VSIG10L2P0DP72 767 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 SLC2A2P11168 524 aaPredicted RBP10.96□□□□□ -0.65
SHMT2-219ENST00000555563 GADD45AP24522 165 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 IL3RAP26951 378 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 PPP1CCP36873 323 aaKnown RBP10.96□□□□□ -0.65
SHMT2-219ENST00000555563 ZNF134P52741 427 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 TMEM50BP56557 158 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 TMEM95Q3KNT9 176 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 MORN2Q502X0 79 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 CT45A1Q5HYN5 189 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 PLAC9Q5JTB6 97 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 ZNF880Q6PDB4 577 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 DTX3Q8N9I9 347 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 CT45A3Q8NHU0 189 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 SETD6Q8TBK2 473 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 ST6GALNAC6Q969X2 333 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 GALMQ96C23 342 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 AKR1E2Q96JD6 320 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 CHCHD6Q9BRQ6 235 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 PECRQ9BY49 303 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 C12orf4Q9NQ89 552 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 JPT1Q9UK76 154 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 RAB22AQ9UL26 194 aa10.96□□□□□ -0.65
SHMT2-219ENST00000555563 TRBV6-6A0A0A6YYG2 114 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 IGHV1-3A0A0C4DH29 117 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 LOC100506127A0A0U1RQW1 187 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 SH2D7A6NKC9 451 aaPredicted RBP10.95□□□□□ -0.66
SHMT2-219ENST00000555563 FAM90A9PA6NNJ1 464 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 NOTOA8MTQ0 251 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 TNFAIP8O95379 198 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 IGKV1D-33P01593 117 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 IGKV1-33P01594 117 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 GAPDHP04406 335 aaKnown RBP10.95□□□□□ -0.66
SHMT2-219ENST00000555563 FAM106CPP0CH98 169 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 CD36P16671 472 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 ZNF137PP52743 207 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 HTD2P86397 168 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 HERPUD1Q15011 391 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 MOGAT2Q3SYC2 334 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 Q6ZTK2 550 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 ABHD14AQ9BUJ0 271 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 RIMS4Q9H426 269 aaPredicted RBP10.95□□□□□ -0.66
SHMT2-219ENST00000555563 RNF167Q9H6Y7 350 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 ABRACLQ9P1F3 81 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 MOB4Q9Y3A3 225 aa10.95□□□□□ -0.66
SHMT2-219ENST00000555563 IGHV3-72A0A0B4J1Y9 119 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 YPEL1O60688 119 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 AMY1AP04745 511 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 AMY2AP04746 511 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 TMEM11P17152 192 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 RAB6AP20340 208 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 SDC2P34741 201 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 VDAC2P45880 294 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-219ENST00000555563 HLA-DRB3P79483 266 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 HES1Q14469 280 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 ABCA11PQ4W5N1 156 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 ARSJQ5FYB0 599 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-219ENST00000555563 HIST2H2BDQ6DRA6 164 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 MOB3BQ86TA1 216 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 TPRA1Q86W33 373 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 THNSL2Q86YJ6 484 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 IZUMO1Q8IYV9 350 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 LYG1Q8N1E2 194 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 C11orf44Q8N8P7 122 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 TSPAN14Q8NG11 270 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 RTN4IP1Q8WWV3 396 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-219ENST00000555563 IL1F10Q8WWZ1 152 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 RAB3CQ96E17 227 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 KCTD7Q96MP8 289 aa10.94□□□□□ -0.66
SHMT2-219ENST00000555563 YPEL2Q96QA6 119 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms