RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 ARHGAP5-AS1Q96IT6 56 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 PARP12Q9H0J9 701 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 RANBP3Q9H6Z4 567 aaPredicted RBP9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 ZNF696Q9H7X3 374 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 PLEKHJ1Q9NW61 149 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 TXNL4BQ9NX01 149 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 STEAP1Q9UHE8 339 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 PITPNC1Q9UKF7 332 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 AMMECR1Q9Y4X0 333 aaPredicted RBP9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 CMYA5Q8N3K9 4069 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 IFITM5A6NNB3 132 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 FAM90A9PA6NNJ1 464 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 ZNF736B4DX44 427 aaPredicted RBP9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 HSD17B6O14756 317 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 CA11O75493 328 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 NAPSAO96009 420 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 GADD45AP24522 165 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 MYL9P24844 172 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 MNDAP41218 407 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 ABCA11PQ4W5N1 156 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 SLC16A12Q6ZSM3 486 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 SETD6Q8TBK2 473 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 FCGR1BQ92637 280 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 ST6GALNAC6Q969X2 333 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 CREB3L1Q96BA8 519 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 RBM14Q96PK6 669 aaKnown RBP9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 SLC25A33Q9BSK2 321 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 PECRQ9BY49 303 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 PRSS22Q9GZN4 317 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 OR2S2Q9NQN1 319 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 KCNIP1Q9NZI2 227 aa9.24□□□□□ -0.93
CCDC88C-208ENST00000554165 IGHV1-3A0A0C4DH29 117 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 OOSP1A8MZH6 123 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 PDCD5O14737 125 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 OR2F2O95006 317 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 TSPAN15O95858 294 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 LPLP06858 475 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 RAB3BP20337 219 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 HMGN3Q15651 99 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 KCTD21Q4G0X4 260 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 MORN2Q502X0 79 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 CCDC144NLQ6NUI1 221 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 ZNF880Q6PDB4 577 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 SLC25A48Q6ZT89 311 aaKnown RBP9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 MOB3BQ86TA1 216 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 LINC00311Q8N616 119 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 OCSTAMPQ9BR26 566 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 CHCHD6Q9BRQ6 235 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 URM1Q9BTM9 101 aaKnown RBP9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 CHMP1AQ9HD42 196 aaPredicted RBP9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 STUB1Q9UNE7 303 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 KCNK7Q9Y2U2 307 aa9.23□□□□□ -0.93
CCDC88C-208ENST00000554165 MEGF8Q7Z7M0 2845 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 LOC100506127A0A0U1RQW1 187 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 IGKV1D-33P01593 117 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 IGKV1-33P01594 117 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 GAPDHP04406 335 aaKnown RBP9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 CD28P10747 220 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 GALP22466 123 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 FGF9P31371 208 aaPredicted RBP9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 TGFBR1P36897 503 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 RAB7AP51149 207 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 ZNF816Q0VGE8 651 aaPredicted RBP9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 HES1Q14469 280 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 HERPUD1Q15011 391 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 TRAT1Q6PIZ9 186 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 C10orf99Q6UWK7 81 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 TREML4Q6UXN2 200 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 Q6ZTK2 550 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 OR8H3Q8N146 312 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 C8orf31Q8N9H6 132 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 WIPF2Q8TF74 440 aaPredicted RBP9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 RTN4IP1Q8WWV3 396 aaPredicted RBP9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 IL1F10Q8WWZ1 152 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 CENPOQ9BU64 300 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 LIN7BQ9HAP6 207 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 OR1A1Q9P1Q5 309 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 ELF5Q9UKW6 265 aaPredicted RBP9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 RAB22AQ9UL26 194 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 SSR3Q9UNL2 185 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 NOTCH3Q9UM47 2321 aa9.22□□□□□ -0.93
CCDC88C-208ENST00000554165 A0A075B6Q4 140 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 H3BUI4 141 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 SCTP09683 121 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 FAM106CPP0CH98 169 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 SNRPBP14678 240 aaKnown RBP9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 GNB3P16520 340 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 CD36P16671 472 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 TMEM11P17152 192 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 SDC2P34741 201 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 VDAC2P45880 294 aaPredicted RBP9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 OR3A3P47888 321 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 PSMD7P51665 324 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 ARHGDIBP52566 201 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 MXD1Q05195 221 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 ARSJQ5FYB0 599 aaPredicted RBP9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 C9orf152Q5JTZ5 239 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 THNSL2Q86YJ6 484 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 ODF3L1Q8IXM7 274 aa9.21□□□□□ -0.94
CCDC88C-208ENST00000554165 OR56B1Q8NGI3 324 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms