RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 SOX6P35712 828 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 UBA52P62987 128 aaKnown RBP13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 SLC9A3R2Q15599 337 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 SSX2Q16385 188 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 ZNF260Q3ZCT1 412 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 LDLRAD2Q5SZI1 272 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 HACD4Q5VWC8 232 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 IZUMO1Q8IYV9 350 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 OR52L2PQ8NGH6 319 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 OR10V1Q8NGI7 309 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 SSMEM1Q8WWF3 244 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 IL1F10Q8WWZ1 152 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 MEGF9Q9H1U4 602 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 MMP28Q9H239 520 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 HILPDAQ9Y5L2 63 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 SVEP1Q4LDE5 3571 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 LEUTXA8MZ59 168 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 BUB1B-PAK6H3BSN5 160 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 FCGR3AP08637 254 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 IER3P46695 156 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 GNG2P59768 71 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 HLA-DRB3P79483 266 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 HTD2P86397 168 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 PITPNAQ00169 270 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 PNLIPRP3Q17RR3 467 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 DYNAPQ8N1N2 210 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 DTX3Q8N9I9 347 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 CREB3L1Q96BA8 519 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 DPAGT1Q9H3H5 408 aa13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 ZNF230Q9UIE0 474 aaPredicted RBP13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 AMMECR1Q9Y4X0 333 aaPredicted RBP13.14□□□□□ -0.31
CHMP1A-209ENST00000550872 BTBD17A6NE02 478 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 TRDCB7Z8K6 153 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 CLDN34H7C241 214 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 XRCC3O43542 346 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 HPGDSO60760 199 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 IGHV4-59P01825 116 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 EIF4EP06730 217 aaKnown RBP13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 SCTP09683 121 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 PPP1CCP36873 323 aaKnown RBP13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 CEACAM3P40198 252 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 GNMTQ14749 295 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 Q3ZCU0 254 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 MORN2Q502X0 79 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 PLA1AQ53H76 456 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 TMEM86BQ8N661 226 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 OR10X1Q8NGY0 326 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 NUDCD2Q8WVJ2 157 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 MAFIPQ8WZ33 124 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 CMTM3Q96MX0 182 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 SSX3Q99909 188 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 AUNIPQ9H7T9 357 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 JPT1Q9UK76 154 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 POMT1Q9Y6A1 747 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 CUBNO60494 3623 aa13.13□□□□□ -0.31
CHMP1A-209ENST00000550872 SMIM31A0A1B0GVY4 71 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 YPEL1O60688 119 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 RGS11O94810 467 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 APOA1P02647 267 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 DTYMKP23919 212 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 MNDAP41218 407 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 KIR2DS4P43632 304 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 KIR2DS1Q14954 304 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 LRRC75BQ2VPJ9 315 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 TPTE2P1Q5T6R2 138 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 STEAP3Q658P3 488 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 LINC00311Q8N616 119 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 C8orf31Q8N9H6 132 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 DYNC2LI1Q8TCX1 351 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 YPEL2Q96QA6 119 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 OCSTAMPQ9BR26 566 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 ST6GALNAC5Q9BVH7 336 aa13.12□□□□□ -0.31
CHMP1A-209ENST00000550872 FAM25AB3EWG3 89 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 FAM25CB3EWG5 89 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 FAM25GB3EWG6 89 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 LY6LH3BQJ8 138 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 H3BUX3 64 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 SLC31A2O15432 143 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 FABP7O15540 132 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 HSPA12AO43301 675 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 ELK1P19419 428 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 ZNF134P52741 427 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 MADCAM1Q13477 382 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 AANATQ16613 207 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 CT45A1Q5HYN5 189 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 TMEM69Q5SWH9 247 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 C16orf87Q6PH81 154 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 SLC25A48Q6ZT89 311 aaKnown RBP13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 ZNF439Q8NDP4 499 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 OR4A4PQ8NGN8 299 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 OR5R1Q8NH85 324 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 CT45A3Q8NHU0 189 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 ZFAND2BQ8WV99 257 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 TMEM158Q8WZ71 300 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 RPEQ96AT9 228 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 CHIAQ9BZP6 476 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 RBM38Q9H0Z9 239 aaKnown RBP13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 ABCB10Q9NRK6 738 aa13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 CCDC59Q9P031 241 aaKnown RBP13.11□□□□□ -0.31
CHMP1A-209ENST00000550872 RSL24D1Q9UHA3 163 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms