RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 WSB1Q9Y6I7 421 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 PKD1P98161 4303 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 DNAH17Q9UFH2 4485 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 TRGV10A0A0A0MS01 117 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 A0A1B0GVY2 172 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 A0A1W2PPE3 182 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 A0A1W2PPK0 400 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 NUPR2A6NF83 97 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 SIRPB1O00241 398 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 CXCR6O00574 342 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 PRAF2O60831 178 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 RBMXL2O75526 392 aaKnown RBP4.91□□□□□ -1.62
LIMA1-204ENST00000549064 REG1BP48304 166 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 GSSP48637 474 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 AMTP48728 403 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 GNG10P50151 68 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 RIPPLY1Q0D2K3 151 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 EBI3Q14213 229 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 C17orf58Q2M2W7 97 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 ETFRF1Q6IPR1 90 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 CEMP1Q6PRD7 247 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-204ENST00000549064 MOB3BQ86TA1 216 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 Q8N6K4 173 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 RNF148Q8N7C7 305 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 NANOGP1Q8N7R0 232 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 OR8D4Q8NGM9 314 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 OR9G1Q8NH87 305 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 OR51E1Q8TCB6 317 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 THEM6Q8WUY1 208 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 EMG1Q92979 244 aaKnown RBP4.91□□□□□ -1.62
LIMA1-204ENST00000549064 CEP19Q96LK0 163 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 S1PR3Q99500 378 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 TEAD3Q99594 435 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 NMNAT2Q9BZQ4 307 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 TOLLIPQ9H0E2 274 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 MED20Q9H944 212 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 GPR84Q9NQS5 396 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 PLSCR3Q9NRY6 295 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 DCAF13Q9NV06 445 aaKnown RBP4.91□□□□□ -1.62
LIMA1-204ENST00000549064 ENPP5Q9UJA9 477 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 STUB1Q9UNE7 303 aa4.91□□□□□ -1.62
LIMA1-204ENST00000549064 IGKV1-27A0A075B6S5 117 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 C5orf51A6NDU8 294 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 ZNF736B4DX44 427 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-204ENST00000549064 MRASO14807 208 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 MPZL2O60487 215 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 IGF1P05019 195 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 SLC2A2P11168 524 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-204ENST00000549064 MYOD1P15172 320 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 NCK1P16333 377 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 ERP29P30040 261 aaKnown RBP4.9□□□□□ -1.63
LIMA1-204ENST00000549064 SOX6P35712 828 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 PTGFRP43088 359 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 KIR3DL2P43630 455 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 RAB9AP51151 201 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 AESQ08117 197 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 IL24Q13007 206 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 MADCAM1Q13477 382 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 LTC4SQ16873 150 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 AARDQ4LEZ3 155 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 SLX4IPQ5VYV7 408 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 LGALS9CQ6DKI2 356 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 AQP12AQ8IXF9 295 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 ODF3L1Q8IXM7 274 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 OR4D6Q8NGJ1 314 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 RNASE8Q8TDE3 154 aaKnown RBP4.9□□□□□ -1.63
LIMA1-204ENST00000549064 C5orf30Q96GV9 206 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 RASL11BQ9BPW5 248 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 BTBD10Q9BSF8 475 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 PKIBQ9C010 78 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 WFDC10AQ9H1F0 79 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 FAM206AQ9NX38 181 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 CMTM6Q9NX76 183 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 NKIRAS1Q9NYS0 192 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 TAS2R3Q9NYW6 316 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 SIGLEC8Q9NYZ4 499 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 PSG11Q9UQ72 335 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 TMED3Q9Y3Q3 217 aa4.9□□□□□ -1.63
LIMA1-204ENST00000549064 FAM32AQ9Y421 112 aaKnown RBP4.9□□□□□ -1.63
LIMA1-204ENST00000549064 AMMECR1Q9Y4X0 333 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-204ENST00000549064 IGHV1-3A0A0C4DH29 117 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 A0A0U1RQV5 110 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 FAM230AA0A1W2PPH8 454 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 ODAMA1E959 279 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 IZUMO1RA6ND01 250 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 HSD17B6O14756 317 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 ATP6V0E1O15342 81 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 GADD45GO95257 159 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 IGLV3-1P01715 115 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 IGHV3-11P01762 117 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 LYNP07948 512 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 LGALS1P09382 135 aaKnown RBP4.89□□□□□ -1.63
LIMA1-204ENST00000549064 OR5H8P0DN80 308 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 H2AFXP16104 143 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-204ENST00000549064 BCL3P20749 454 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 NPBWR2P48146 333 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 NUDT2P50583 147 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 RAB7AP51149 207 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 HCCSP53701 268 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 BRWD1-AS2P59051 145 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms