RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 TMEM106AQ96A25 262 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 S100A13Q99584 98 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 SPACA1Q9HBV2 294 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 ZNF581Q9P0T4 197 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 SEC14L6B5MCN3 397 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 MT-ND4P03905 459 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 TFAP2AP05549 437 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 VDAC1P21796 283 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 PSMB8P28062 276 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 CHATP28329 748 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 SOX6P35712 828 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 SOX2P48431 317 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 INSL3P51460 131 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 PPP3R1P63098 170 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 STEAP3Q658P3 488 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 OR52I1Q8NGK6 324 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 TMEM80Q96HE8 168 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 PRR25Q96S07 402 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 FGF20Q9NP95 211 aaPredicted RBP10.05□□□□□ -0.8
PTCH1-218ENST00000548945 CHCHD3Q9NX63 227 aaKnown RBP10.05□□□□□ -0.8
PTCH1-218ENST00000548945 ING4Q9UNL4 249 aa10.05□□□□□ -0.8
PTCH1-218ENST00000548945 DIMT1Q9UNQ2 313 aaKnown RBP10.05□□□□□ -0.8
PTCH1-218ENST00000548945 AIPO00170 330 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 SPINT2O43291 252 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 LIMS3P0CW19 117 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 LIMS4P0CW20 117 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 GTF2F2P13984 249 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 DCKP27707 260 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 BDKRB2P30411 391 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 ECI1P42126 302 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 ALDH3B2P48448 385 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 GTF2A1P52655 376 aaPredicted RBP10.04□□□□□ -0.8
PTCH1-218ENST00000548945 RUNX1Q01196 453 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 GPR176Q14439 515 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 TBCEQ15813 527 aaPredicted RBP10.04□□□□□ -0.8
PTCH1-218ENST00000548945 ATAD3CQ5T2N8 411 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 DDI2Q5TDH0 399 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 RNLSQ5VYX0 342 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 TRAT1Q6PIZ9 186 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 ZNF439Q8NDP4 499 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 FCGR1BQ92637 280 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 MRPS24Q96EL2 167 aaKnown RBP10.04□□□□□ -0.8
PTCH1-218ENST00000548945 UBE2E2Q96LR5 201 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 HSPB9Q9BQS6 159 aa10.04□□□□□ -0.8
PTCH1-218ENST00000548945 RCC2Q9P258 522 aaKnown RBP10.04□□□□□ -0.8
PTCH1-218ENST00000548945 ZNF256Q9Y2P7 627 aaPredicted RBP10.04□□□□□ -0.8
PTCH1-218ENST00000548945 ZNF736B4DX44 427 aaPredicted RBP10.03□□□□□ -0.8
PTCH1-218ENST00000548945 C12orf77C9JDV5 145 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 LANCL1O43813 399 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 CA11O75493 328 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 GPX5O75715 221 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 OR8U8P0C7N1 319 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 MYL12AP19105 171 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 SERPINA2P20848 420 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 F2RL1P55085 397 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 IRF3Q14653 427 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 NEDD8Q15843 81 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 C6orf183Q5T699 404 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 GAPTQ8N292 157 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 NEK7Q8TDX7 302 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 CCDC107Q8WV48 283 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 KCTD7Q96MP8 289 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 ACOT13Q9NPJ3 140 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 GNG12Q9UBI6 72 aa10.03□□□□□ -0.8
PTCH1-218ENST00000548945 EXOSC1Q9Y3B2 195 aaKnown RBP10.03□□□□□ -0.8
PTCH1-218ENST00000548945 TENM2Q9NT68 2774 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 IGHV3-43A0A0B4J1X8 118 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 MCRIP1C9JLW8 97 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 SLC31A2O15432 143 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 IGHV3-43DP0DP04 118 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 IGFBP3P17936 291 aaPredicted RBP10.02□□□□□ -0.81
PTCH1-218ENST00000548945 PPIFP30405 207 aaKnown RBP10.02□□□□□ -0.81
PTCH1-218ENST00000548945 ZNF134P52741 427 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 LSAMPQ13449 338 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 ZNF260Q3ZCT1 412 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 SLC22A6Q4U2R8 563 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 CT45A1Q5HYN5 189 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 SYT6Q5T7P8 510 aaPredicted RBP10.02□□□□□ -0.81
PTCH1-218ENST00000548945 XAF1Q6GPH4 301 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 FAM53AQ6NSI3 398 aaPredicted RBP10.02□□□□□ -0.81
PTCH1-218ENST00000548945 TMPRSS11AQ6ZMR5 421 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 OR11H1Q8NG94 326 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 CT45A3Q8NHU0 189 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 UBALD1Q8TB05 177 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 MUL1Q969V5 352 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 SMIM19Q96E16 107 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 MND1Q9BWT6 205 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 NDUFA13Q9P0J0 144 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 ZNF107Q9UII5 783 aaPredicted RBP10.02□□□□□ -0.81
PTCH1-218ENST00000548945 TRAPPC2LQ9UL33 140 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 VSIG4Q9Y279 399 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 ERGIC3Q9Y282 383 aa10.02□□□□□ -0.81
PTCH1-218ENST00000548945 SMIM31A0A1B0GVY4 71 aa10.01□□□□□ -0.81
PTCH1-218ENST00000548945 DPPA5A6NC42 116 aa10.01□□□□□ -0.81
PTCH1-218ENST00000548945 FAM90A10PA6NDY2 464 aa10.01□□□□□ -0.81
PTCH1-218ENST00000548945 A6NHS1 94 aa10.01□□□□□ -0.81
PTCH1-218ENST00000548945 FAM90A7PA6NKC0 464 aa10.01□□□□□ -0.81
PTCH1-218ENST00000548945 FAM90A23PA8MXZ1 464 aa10.01□□□□□ -0.81
PTCH1-218ENST00000548945 I3L521 148 aa10.01□□□□□ -0.81
PTCH1-218ENST00000548945 MYL12BO14950 172 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms