RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 CD200P41217 278 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 SULT1A2P50226 295 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 IL24Q13007 206 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 SLC25A53Q5H9E4 307 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 NCMAPQ5T1S8 102 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 FAM214BQ7L5A3 538 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 C5orf24Q7Z6I8 188 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 POC1AQ8NBT0 407 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 AQP10Q96PS8 301 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 OPN3Q9H1Y3 402 aaPredicted RBP13.47□□□□□ -0.25
CUX1-211ENST00000546411 CXXC4Q9H2H0 198 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 hCG_38984A0A1B0GV85 526 aa13.46□□□□□ -0.25
CUX1-211ENST00000546411 TMEM37Q8WXS4 190 aa13.46□□□□□ -0.25
CUX1-211ENST00000546411 HSF4Q9ULV5 492 aa13.46□□□□□ -0.25
CUX1-211ENST00000546411 DVL1O14640 695 aa13.46□□□□□ -0.25
CUX1-211ENST00000546411 SEC11BP0C7V7 166 aa13.46□□□□□ -0.25
CUX1-211ENST00000546411 CISD2Q8N5K1 135 aaKnown RBP13.46□□□□□ -0.25
CUX1-211ENST00000546411 LRFN3Q9BTN0 628 aa13.46□□□□□ -0.25
CUX1-211ENST00000546411 SSUH2Q9Y2M2 353 aa13.46□□□□□ -0.25
CUX1-211ENST00000546411 TMPRSS2O15393 492 aa13.46□□□□□ -0.26
CUX1-211ENST00000546411 SULT1A1P50225 295 aa13.46□□□□□ -0.26
CUX1-211ENST00000546411 TNFAIP6P98066 277 aaPredicted RBP13.46□□□□□ -0.26
CUX1-211ENST00000546411 LDLRAD3Q86YD5 345 aa13.46□□□□□ -0.26
CUX1-211ENST00000546411 ZIC4Q8N9L1 334 aa13.46□□□□□ -0.26
CUX1-211ENST00000546411 OR4A4PQ8NGN8 299 aa13.46□□□□□ -0.26
CUX1-211ENST00000546411 ATP5SQ99766 215 aa13.46□□□□□ -0.26
CUX1-211ENST00000546411 ZNF703Q9H7S9 590 aaPredicted RBP13.46□□□□□ -0.26
CUX1-211ENST00000546411 PARP11Q9NR21 331 aa13.46□□□□□ -0.26
CUX1-211ENST00000546411 ZNF581Q9P0T4 197 aa13.46□□□□□ -0.26
CUX1-211ENST00000546411 KCNMB2Q9Y691 235 aa13.46□□□□□ -0.26
CUX1-211ENST00000546411 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.46□□□□□ -0.263e-7■■■■■ 26.8
CUX1-211ENST00000546411 SPG11Q96JI7 2443 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 GALR2O43603 387 aaPredicted RBP13.45□□□□□ -0.26
CUX1-211ENST00000546411 ZNF737O75373 536 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 MDKP21741 143 aaPredicted RBP13.45□□□□□ -0.26
CUX1-211ENST00000546411 CHRNA7P36544 502 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 PTGDSP41222 190 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 NSUN5P2Q63ZY6 315 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 OR10G4Q8NGN3 311 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 OR10G9Q8NGN4 311 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 OR10G7Q8NGN6 311 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 OR1L1Q8NH94 360 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 GMPPAQ96IJ6 420 aaPredicted RBP13.45□□□□□ -0.26
CUX1-211ENST00000546411 V9GYS6 101 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 BTBD17A6NE02 478 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 MDH2P40926 338 aaKnown RBP13.45□□□□□ -0.26
CUX1-211ENST00000546411 CNIH1O95406 144 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 HOXD4P09016 255 aaPredicted RBP13.45□□□□□ -0.26
CUX1-211ENST00000546411 SSMEM1Q8WWF3 244 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 TMEM230Q96A57 120 aa13.45□□□□□ -0.26
CUX1-211ENST00000546411 SPINK4O60575 86 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 FTH1P19P0C7X4 201 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 DTD1Q8TEA8 209 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 LOC102723996A0A087X1L8 192 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 LOC390937A0A1W2PQ73 354 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 ZNF891A8MT65 544 aaPredicted RBP13.44□□□□□ -0.26
CUX1-211ENST00000546411 C9orf172C9J069 976 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 WNT9BO14905 357 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 PGLYRP1O75594 196 aaPredicted RBP13.44□□□□□ -0.26
CUX1-211ENST00000546411 TMEM187Q14656 261 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 RTL8BQ17RB0 113 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 RNF126Q9BV68 326 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 DDA1Q9BW61 102 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 LAMA3Q16787 3333 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 PROB1E7EW31 1015 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 TSTD3H0UI37 97 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 DEFA4P12838 97 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 CCL8P80075 99 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 KCNMB1Q16558 191 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 FAM166AQ6J272 317 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 BAGE3Q86Y29 109 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 BAGE2Q86Y30 109 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 UBAC2Q8NBM4 344 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 FDCSPQ8NFU4 85 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 PRDM14Q9GZV8 571 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 OR51I2Q9H344 312 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 DEFA6Q01524 100 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 STUMQ69YW2 141 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 BHLHA15Q7RTS1 189 aaPredicted RBP13.44□□□□□ -0.26
CUX1-211ENST00000546411 BIVMQ86UB2 503 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 CYB561D1Q8N8Q1 229 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 R3HDM4Q96D70 268 aa13.44□□□□□ -0.26
CUX1-211ENST00000546411 H3BQ15 152 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 PRR14LQ5THK1 2151 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 PRSS44E7EML9 344 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 SNRPCP09234 159 aaKnown RBP13.43□□□□□ -0.26
CUX1-211ENST00000546411 DHRS11Q6UWP2 260 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 RARRES2Q99969 163 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 Q9N2K0 584 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 ZNF320A2RRD8 509 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 HBZP02008 142 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 MBP02144 154 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 DLK1P80370 383 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 COL10A1Q03692 680 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 ZFP36L1Q07352 338 aaKnown RBP13.43□□□□□ -0.26
CUX1-211ENST00000546411 GPR146Q96CH1 333 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 TUBG2Q9NRH3 451 aa13.43□□□□□ -0.26
CUX1-211ENST00000546411 RRP8O43159 456 aaKnown RBP13.42□□□□□ -0.26
CUX1-211ENST00000546411 CELA3BP08861 270 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 FBP1P09467 338 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms