RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RPL36Q9Y3U8 105 aaKnown RBP6.66□□□□□ -1.34
USP28-215ENST00000545608 IGHV3-43A0A0B4J1X8 118 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 TMEM30CPA0ZSE6 113 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 NCBP2LA6PVI3 153 aaKnown RBP6.65□□□□□ -1.34
USP28-215ENST00000545608 ZNF736B4DX44 427 aaPredicted RBP6.65□□□□□ -1.34
USP28-215ENST00000545608 SDCBPO00560 298 aaPredicted RBP6.65□□□□□ -1.34
USP28-215ENST00000545608 SLC31A2O15432 143 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 OGG1O15527 345 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 WBP4O75554 376 aaKnown RBP6.65□□□□□ -1.34
USP28-215ENST00000545608 MT-ND4P03905 459 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 CSTBP04080 98 aaKnown RBP6.65□□□□□ -1.34
USP28-215ENST00000545608 CD2P06729 351 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 IGHV3-43DP0DP04 118 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 SERPINA2P20848 420 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 ZNF93P35789 620 aaPredicted RBP6.65□□□□□ -1.34
USP28-215ENST00000545608 RBM11P57052 281 aaKnown RBP6.65□□□□□ -1.34
USP28-215ENST00000545608 SLC35B1P78383 322 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 PNLIPRP3Q17RR3 467 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 KLHL22Q53GT1 634 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 NHLRC3Q5JS37 347 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 ATAD3CQ5T2N8 411 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 DDI2Q5TDH0 399 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 RPL22L1Q6P5R6 122 aaKnown RBP6.65□□□□□ -1.34
USP28-215ENST00000545608 LCNL1Q6ZST4 164 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 TGIF2LXQ8IUE1 241 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 ZNF695Q8IW36 515 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 FOXRED2Q8IWF2 684 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 LINC00311Q8N616 119 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 COMMD1Q8N668 190 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 Q8N9W7 124 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 KLHL30-AS1Q8NEE0 82 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 OR52M1Q8NGK5 317 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 OR13C5Q8NGS8 318 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 DPF1Q92782 380 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 ST6GALNAC6Q969X2 333 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 MCRIP2Q9BUT9 160 aaKnown RBP6.65□□□□□ -1.34
USP28-215ENST00000545608 C9orf16Q9BUW7 83 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 GPR61Q9BZJ8 451 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 ABCG5Q9H222 651 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 TMEM138Q9NPI0 162 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 PLSCR3Q9NRY6 295 aa6.65□□□□□ -1.34
USP28-215ENST00000545608 CCL24O00175 119 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 AP4M1O00189 453 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 ORC5O43913 435 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 LALBAP00709 142 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 IGFBP3P17936 291 aaPredicted RBP6.64□□□□□ -1.35
USP28-215ENST00000545608 DCKP27707 260 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 BDKRB2P30411 391 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 SLC6A1P30531 599 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 GPR12P47775 334 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 PPP3R1P63098 170 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 CD69Q07108 199 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 RGS21Q2M5E4 152 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 MPV17LQ2QL34 196 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 KCTD21Q4G0X4 260 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 SLC22A6Q4U2R8 563 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 CCDC58Q4VC31 144 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 NKAPLQ5M9Q1 402 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 TEX38Q6PEX7 206 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 ZNF497Q6ZNH5 498 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 IZUMO1Q8IYV9 350 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 PACRGLQ8N7B6 248 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 TMEM104Q8NE00 496 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 OR2T10Q8NGZ9 312 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 RTN4IP1Q8WWV3 396 aaPredicted RBP6.64□□□□□ -1.35
USP28-215ENST00000545608 RAX2Q96IS3 184 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 CYYR1Q96J86 154 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 B9D2Q9BPU9 175 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 YTHDF1Q9BYJ9 559 aaKnown RBP6.64□□□□□ -1.35
USP28-215ENST00000545608 LIN7CQ9NUP9 197 aaKnown RBP6.64□□□□□ -1.35
USP28-215ENST00000545608 BABAM2Q9NXR7 383 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 CLEC2DQ9UHP7 191 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 CEPT1Q9Y6K0 416 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 DNAH3Q8TD57 4116 aa6.64□□□□□ -1.35
USP28-215ENST00000545608 TRAV8-7A0A075B6U6 113 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 TRBV5-5A0A0J9YX44 114 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 AIPO00170 330 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 GPX5O75715 221 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 GTF2F2P13984 249 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 CD1BP29016 333 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 ALDH3B2P48448 385 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 ZNF134P52741 427 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 F2RL1P55085 397 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 RAB25P57735 213 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 RPS11P62280 158 aaKnown RBP eCLIP6.63□□□□□ -1.35
USP28-215ENST00000545608 DGCR2P98153 550 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 GPR50Q13585 617 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 KIR2DS1Q14954 304 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 DEFB136Q30KP8 78 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 CT45A1Q5HYN5 189 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 SYT6Q5T7P8 510 aaPredicted RBP6.63□□□□□ -1.35
USP28-215ENST00000545608 STEAP3Q658P3 488 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 DMKNQ6E0U4 476 aaPredicted RBP6.63□□□□□ -1.35
USP28-215ENST00000545608 UNQ9370/PRO34162Q6UXP9 181 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 TMPRSS11AQ6ZMR5 421 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 C5orf24Q7Z6I8 188 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 LINC00596Q86U02 117 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 ZFP41Q8N8Y5 198 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 C8orf31Q8N9H6 132 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 ZNF439Q8NDP4 499 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms