RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 H0Y8G0 127 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 FCARP24071 287 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 OR3A1P47881 315 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 CEACAM21Q3KPI0 293 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 LRRC29Q8WV35 223 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 MED29Q9NX70 200 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 IL36GQ9NZH8 169 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 MYH14Q7Z406 1995 aaKnown RBP6.82□□□□□ -1.32
VPS13D-211ENST00000543710 CDK5RAP2Q96SN8 1893 aa6.82□□□□□ -1.32
VPS13D-211ENST00000543710 K7ENP7 123 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 EML2O95834 649 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 KIR2DL1P43626 348 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-211ENST00000543710 CENPVQ7Z7K6 275 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-211ENST00000543710 OR10D3Q8NH80 312 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 FAM57AQ8TBR7 257 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 MYOZ3Q8TDC0 251 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 EMC6Q9BV81 110 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 TPPP3Q9BW30 176 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 CXCL16Q9H2A7 254 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 A0A087WWC5 75 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 OR4C45A6NMZ5 311 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF716A6NP11 495 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 NXPH3O95157 252 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 PTGER1P34995 402 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 LGALS7P47929 136 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 SELENOPP49908 381 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 SLC37A1P57057 533 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF721Q8TF20 911 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF775Q96BV0 537 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-211ENST00000543710 HIGD1AQ9Y241 93 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 KCNE3Q9Y6H6 103 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 URGCP-MRPS24S4R325 110 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 C17orf51A8MQB3 221 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 TCF21O43680 179 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 CD8AP01732 235 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 HLA-DQA1P01909 254 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 BCL2P10415 239 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 Q1RN00 199 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 RIPPLY2Q5TAB7 128 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 OR11H7Q8NGC8 314 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 C8orf46Q8TAG6 207 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 Q8WTZ3 238 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 SCARF2Q96GP6 870 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-211ENST00000543710 SMIM8Q96KF7 97 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 LINC00470Q9BZP3 86 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 PLAC1Q9HBJ0 212 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 ZNFX1Q9P2E3 1918 aaKnown RBP6.81□□□□□ -1.32
VPS13D-211ENST00000543710 LINC01549A6NIU2 74 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 PPP1R17O96001 155 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 PPYP01298 95 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 FGF12P61328 243 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 OXLD1Q5BKU9 147 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 CXorf66Q5JRM2 361 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-211ENST00000543710 RNFT1Q5M7Z0 435 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 LAMTOR1Q6IAA8 161 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 BHLHE23Q8NDY6 225 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 PRSS3P2Q8NHM4 247 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 IL17DQ8TAD2 202 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 PATE1Q8WXA2 126 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 PRDM14Q9GZV8 571 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 IL19Q9UHD0 177 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 CACNA1BQ00975 2339 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 ERVFRD-1P60508 538 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 NHLH2Q02577 135 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 TCF15Q12870 199 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 PMS2P11Q13670 270 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 MOB3BQ86TA1 216 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 RTN4RL2Q86UN3 420 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 GBGT1Q8N5D6 347 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 LINC01555Q8NAE3 123 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 OR1L8Q8NGR8 309 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 RDH5Q92781 318 aa6.81□□□□□ -1.32
VPS13D-211ENST00000543710 PATJQ8NI35 1801 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 A0A1W2PPV9 198 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 FFAR1O14842 300 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 ADAP1O75689 374 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 RECKO95980 971 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 SNRPEP62304 92 aaKnown RBP6.8□□□□□ -1.32
VPS13D-211ENST00000543710 RPL30P62888 115 aaKnown RBP6.8□□□□□ -1.32
VPS13D-211ENST00000543710 TGIF1Q15583 401 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 FAM78BQ5VT40 261 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 B9A039 149 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF32P17041 273 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 NTF3P20783 257 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 KIR3DL2P43630 455 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF468Q5VIY5 522 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-211ENST00000543710 FAM27BQ5VT28 67 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 VN1R4Q7Z5H5 301 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 STPG3Q8N7X2 389 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 OR10D4PQ8NGN7 298 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 MRPL30Q8TCC3 161 aaKnown RBP6.8□□□□□ -1.32
VPS13D-211ENST00000543710 MCRIP2Q9BUT9 160 aaKnown RBP6.8□□□□□ -1.32
VPS13D-211ENST00000543710 NPFFR1Q9GZQ6 430 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 BEX4Q9NWD9 120 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-211ENST00000543710 A0A1W2PS18 150 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 MED19A0JLT2 244 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-211ENST00000543710 FCGR3BO75015 233 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 FZD5Q13467 585 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 COL5A1-AS1Q5SY13 56 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms