RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 SKP2Q13309 424 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 PAXXQ9BUH6 204 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 MVDP53602 400 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 PRICKLE4Q2TBC4 344 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 ZNF519Q8TB69 540 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 HOXC4P09017 264 aaPredicted RBP17.03■□□□□ 0.32
HDAC4-215ENST00000543185 SPNS2Q8IVW8 549 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 FLYWCH2Q96CP2 140 aaKnown RBP17.03■□□□□ 0.32
HDAC4-215ENST00000543185 ZNF250P15622 560 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 CD1BP29016 333 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 SLC26A1Q9H2B4 701 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 PKDREJQ9NTG1 2253 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 MKRN2OSH3BPM6 223 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 MUC1P15941 1255 aaPredicted RBP17.03■□□□□ 0.32
HDAC4-215ENST00000543185 MAP1LC3AQ9H492 121 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 TGIF2-C20orf24A0A0A6YYL0 155 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 DEFB108AA8MXU0 73 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 CTLA4P16410 223 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 PQLC2Q6ZP29 291 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 OR4X1Q8NH49 305 aa17.03■□□□□ 0.32
HDAC4-215ENST00000543185 SSMEM1Q8WWF3 244 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 DEFB127Q9H1M4 99 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 CCDC144NLQ6NUI1 221 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 SLC25A40Q8TBP6 338 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 RND1Q92730 232 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 ZNF735P0CB33 412 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 NEUROG1Q92886 237 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 SLC6A13Q9NSD5 602 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 WFDC5Q8TCV5 224 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 FRRS1LQ9P0K9 344 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 RAB29O14966 203 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 GGACTQ9BVM4 153 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 TUBD1Q9UJT1 453 aa17.02■□□□□ 0.32
HDAC4-215ENST00000543185 SPRY3O43610 288 aa17.02■□□□□ 0.31
HDAC4-215ENST00000543185 TSPO2Q5TGU0 170 aa17.02■□□□□ 0.31
HDAC4-215ENST00000543185 GVQW1Q8N7I0 195 aa17.02■□□□□ 0.31
HDAC4-215ENST00000543185 COA4Q9NYJ1 87 aa17.02■□□□□ 0.31
HDAC4-215ENST00000543185 GNG10P50151 68 aa17.02■□□□□ 0.31
HDAC4-215ENST00000543185 TNFAIP6P98066 277 aaPredicted RBP17.02■□□□□ 0.31
HDAC4-215ENST00000543185 BRCA1P38398 1863 aaKnown RBP17.02■□□□□ 0.31
HDAC4-215ENST00000543185 FAM90A26D6RGX4 464 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 INSL4Q14641 139 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 C19orf54Q5BKX5 351 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 KCNE5Q9UJ90 142 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 NYNRINQ9P2P1 1898 aaKnown RBP17.01■□□□□ 0.31
HDAC4-215ENST00000543185 ASCL3Q9NQ33 180 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 GABRG2P18507 467 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 IRF3Q14653 427 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 MRGPRFQ96AM1 343 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 LOXL2Q9Y4K0 774 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 KBTBD11O94819 623 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 S1PR2O95136 353 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 MAS1LP35410 378 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 AQP10Q96PS8 301 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 TRAV17A0A0B4J275 112 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 NMBP08949 121 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 TCF23Q7RTU1 214 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 HOGA1Q86XE5 327 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 MRGPRDQ8TDS7 321 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 STPG3Q8N7X2 389 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 GHITMQ9H3K2 345 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 NPVFQ9HCQ7 196 aa17.01■□□□□ 0.31
HDAC4-215ENST00000543185 TRGV5A0A0B4J1U4 118 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 CLEC1BQ9P126 229 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 LGALS3P17931 250 aaKnown RBP17■□□□□ 0.31
HDAC4-215ENST00000543185 TNXAQ16473 311 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 ALG14Q96F25 216 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 CFDP00746 253 aaPredicted RBP17■□□□□ 0.31
HDAC4-215ENST00000543185 OR4A8P0C604 315 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 EIF3IQ13347 325 aaKnown RBP17■□□□□ 0.31
HDAC4-215ENST00000543185 CACNA1EQ15878 2313 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 MSRB3Q8IXL7 192 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 GALNT14Q96FL9 552 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 MOB4Q9Y3A3 225 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 A0A1W2PQD3 144 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 ZNF32P17041 273 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 ATP6V0CP27449 155 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 HSF4Q9ULV5 492 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 PLXNB1O43157 2135 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 SIGLEC5O15389 551 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 MRPS11P82912 194 aaKnown RBP17■□□□□ 0.31
HDAC4-215ENST00000543185 ZNF665Q9H7R5 613 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 MRPL16Q9NX20 251 aaKnown RBP17■□□□□ 0.31
HDAC4-215ENST00000543185 IGHV3-64DA0A0J9YX35 117 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 NUDT3O95989 172 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 RNF133Q8WVZ7 376 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 PRELID3AQ96N28 172 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 RARRES2Q99969 163 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 EIF3GO75821 320 aaKnown RBP eCLIP17■□□□□ 0.31
HDAC4-215ENST00000543185 GHRHP01286 108 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 TYMSP04818 313 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 MGPP08493 103 aa17■□□□□ 0.31
HDAC4-215ENST00000543185 TRGC2P03986 189 aa16.99■□□□□ 0.31
HDAC4-215ENST00000543185 GLIPR1P48060 266 aa16.99■□□□□ 0.31
HDAC4-215ENST00000543185 GGTLC2Q14390 218 aa16.99■□□□□ 0.31
HDAC4-215ENST00000543185 LRRC29Q8WV35 223 aa16.99■□□□□ 0.31
HDAC4-215ENST00000543185 TREM2Q9NZC2 230 aa16.99■□□□□ 0.31
HDAC4-215ENST00000543185 HINT1P49773 126 aaPredicted RBP16.99■□□□□ 0.31
HDAC4-215ENST00000543185 MED19A0JLT2 244 aaPredicted RBP16.99■□□□□ 0.31
HDAC4-215ENST00000543185 LDLRAD3Q86YD5 345 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms