RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 NXPH2O95156 264 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 RD3LP0DJH9 198 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 PAX6P26367 422 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 CFHR2P36980 270 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 VAMP2P63027 116 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 MEX3BQ6ZN04 569 aaKnown RBP8.35□□□□□ -1.07
SS18-205ENST00000542420 ERGIC1Q969X5 290 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 GNPNAT1Q96EK6 184 aaPredicted RBP8.35□□□□□ -1.07
SS18-205ENST00000542420 NCOR1P1Q9H4R4 102 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 ZNF71Q9NQZ8 489 aaPredicted RBP8.35□□□□□ -1.07
SS18-205ENST00000542420 KCNIP1Q9NZI2 227 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 MMP24Q9Y5R2 645 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 OOEPA6NGQ2 149 aa8.34□□□□□ -1.07
SS18-205ENST00000542420 LYZL6O75951 148 aa8.34□□□□□ -1.07
SS18-205ENST00000542420 HAND1O96004 215 aa8.34□□□□□ -1.07
SS18-205ENST00000542420 F12P00748 615 aaPredicted RBP8.34□□□□□ -1.07
SS18-205ENST00000542420 CRYABP02511 175 aaKnown RBP8.34□□□□□ -1.07
SS18-205ENST00000542420 CELA3BP08861 270 aa8.34□□□□□ -1.07
SS18-205ENST00000542420 LPAR6P43657 344 aa8.34□□□□□ -1.07
SS18-205ENST00000542420 C20orf204Q6ZNR8 217 aa8.34□□□□□ -1.07
SS18-205ENST00000542420 Q6ZS92 163 aa8.34□□□□□ -1.07
SS18-205ENST00000542420 SSX8Q7RTT4 187 aa8.34□□□□□ -1.07
SS18-205ENST00000542420 MYPOPQ86VE0 399 aaPredicted RBP8.34□□□□□ -1.07
SS18-205ENST00000542420 FOXRED2Q8IWF2 684 aa8.34□□□□□ -1.07
SS18-205ENST00000542420 RDH5Q92781 318 aa8.34□□□□□ -1.07
SS18-205ENST00000542420 PARD6GQ9BYG4 376 aaPredicted RBP8.34□□□□□ -1.07
SS18-205ENST00000542420 OR5H1A6NKK0 313 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 HS3ST1O14792 307 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 ADAM20O43506 726 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 TNFSF13O75888 250 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 DFFBO76075 338 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 LY86O95711 162 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 OR8U8P0C7N1 319 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 NDUFB7P17568 137 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 SPCS3P61009 180 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 RAB5BP61020 215 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 TESK1Q15569 626 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 IGFBP7Q16270 282 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 Q6ZRG5 221 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 BHLHA15Q7RTS1 189 aaPredicted RBP8.34□□□□□ -1.08
SS18-205ENST00000542420 PLPPR1Q8TBJ4 325 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 LURAP1Q96LR2 239 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 ZNF488Q96MN9 340 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 NEU1Q99519 415 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 CACFD1Q9UGQ2 172 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 TRAPPC2LQ9UL33 140 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 KPTNQ9Y664 436 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 WSB1Q9Y6I7 421 aa8.34□□□□□ -1.08
SS18-205ENST00000542420 OTOGLQ3ZCN5 2332 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 RNASEK-C17orf49H0YIS7 233 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 HSD17B6O14756 317 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 SLC31A2O15432 143 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 SERPINE2P07093 398 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 RCC1P18754 421 aaPredicted RBP8.33□□□□□ -1.08
SS18-205ENST00000542420 AGAP20933 346 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 GCH1P30793 250 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 TIMP3P35625 211 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 TAS2R60P59551 318 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 RPL23AP62750 156 aaKnown RBP8.33□□□□□ -1.08
SS18-205ENST00000542420 FABP9Q0Z7S8 132 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 PEA15Q15121 130 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 SMIM21Q3B7S5 101 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 ACP7Q6ZNF0 438 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 TMEM252Q8N6L7 170 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 CNEP1R1Q8N9A8 125 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 STARD4Q96DR4 205 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 PFDN5Q99471 154 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 DKK4Q9UBT3 224 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 ERRFI1Q9UJM3 462 aaPredicted RBP8.33□□□□□ -1.08
SS18-205ENST00000542420 SLC25A15Q9Y619 301 aa8.33□□□□□ -1.08
SS18-205ENST00000542420 IGHV2OR16-5A0A0B4J2B6 119 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 CECR9P0C854 216 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 WT1P19544 449 aaPredicted RBP8.32□□□□□ -1.08
SS18-205ENST00000542420 NFYBP25208 207 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 NBL1P41271 181 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 AKR1C2P52895 323 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 DEFA6Q01524 100 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 AKR1C1Q04828 323 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 DEFB109BQ30KR1 87 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 MIDNQ504T8 468 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 KRTCAP3Q53RY4 240 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 TIMM23BQ5SRD1 257 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 SPATA46Q5T0L3 261 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 VWA1Q6PCB0 445 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 C11orf53Q8IXP5 236 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 ZNF645Q8N7E2 425 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 PBDC1Q9BVG4 233 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 WFDC1Q9HC57 220 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 TREM1Q9NP99 234 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 LAMP3Q9UQV4 416 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 RNF115Q9Y4L5 304 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 VCANP13611 3396 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 K7N7A8 449 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 CDIPTO14735 213 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 TM4SF5O14894 197 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 MLNRO43193 412 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 TXNL1O43396 289 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 ZNF205O95201 554 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 SNCAP37840 140 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 MPV17P39210 176 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms