RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 KLRB1Q12918 225 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 CRMP1Q14194 572 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 FZD2Q14332 565 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 ZNF345Q14585 488 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 ZNF235Q14590 738 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 TNXAQ16473 311 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 LTC4SQ16873 150 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 IAH1Q2TAA2 248 aaPredicted RBP2.48□□□□□ -2.01
USP28-210ENST00000542033 TIGITQ495A1 244 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 TMEM52BQ4KMG9 183 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 SPIN4Q56A73 249 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 KHDC3LQ587J8 217 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 TMEM128Q5BJH2 165 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 TMEM255AQ5JRV8 349 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 FAM120AOSQ5T036 256 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 ZNF660Q6AZW8 331 aaPredicted RBP2.48□□□□□ -2.01
USP28-210ENST00000542033 C22orf42Q6IC83 251 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 OR10K2Q6IF99 312 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 LCN8Q6JVE9 175 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 RPL22L1Q6P5R6 122 aaKnown RBP2.48□□□□□ -2.01
USP28-210ENST00000542033 TBPL2Q6SJ96 375 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 WDR82Q6UXN9 313 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 HEPN1Q6WQI6 88 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 FA2HQ7L5A8 372 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 GLT6D1Q7Z4J2 308 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 APOBEC3FQ8IUX4 373 aaKnown RBP2.48□□□□□ -2.01
USP28-210ENST00000542033 SLC35G3Q8N808 338 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 SDR9C7Q8NEX9 313 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 OR2Z1Q8NG97 314 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 OR11H7Q8NGC8 314 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 OR52L1Q8NGH7 329 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 OR52E4Q8NGH9 312 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 OR4D11Q8NGI4 311 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 OR1J4Q8NGS1 313 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 OR51Q1Q8NH59 317 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 OR5K2Q8NHB8 316 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 TYMSOSQ8TAI1 123 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 ZNF564Q8TBZ8 553 aaPredicted RBP2.48□□□□□ -2.01
USP28-210ENST00000542033 LGALS14Q8TCE9 139 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 ZPLD1Q8TCW7 415 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 ST8SIA1Q92185 356 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 NAT6Q93015 286 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 GALMQ96C23 342 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 SIGLEC12Q96PQ1 595 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 OR2A7Q96R45 310 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 CLCC1Q96S66 551 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 HCAR1Q9BXC0 346 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 MAP1LC3CQ9BXW4 147 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 LINC00470Q9BZP3 86 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 SRMSQ9H3Y6 488 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 SMDT1Q9H4I9 107 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 IKZF5Q9H5V7 419 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 METTL17Q9H7H0 456 aaPredicted RBP2.48□□□□□ -2.01
USP28-210ENST00000542033 TAF9BQ9HBM6 251 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 EXOSC4Q9NPD3 245 aaKnown RBP2.48□□□□□ -2.01
USP28-210ENST00000542033 MMP26Q9NRE1 261 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 UQCC1Q9NVA1 299 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 OR5AC2Q9NZP5 309 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 NXT1Q9UKK6 140 aaKnown RBP2.48□□□□□ -2.01
USP28-210ENST00000542033 TRAPPC2LQ9UL33 140 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 UBIAD1Q9Y5Z9 338 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 RIMBP3Q9UFD9 1639 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 ERCC6L2Q5T890 1561 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 RGPD1P0DJD0 1748 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 SHANK3Q9BYB0 1731 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 FER1L6Q2WGJ9 1857 aa2.48□□□□□ -2.01
USP28-210ENST00000542033 LMO7Q8WWI1 1683 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 AFDNP55196 1824 aaKnown RBP2.47□□□□□ -2.01
USP28-210ENST00000542033 A2ML1A8K2U0 1454 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 RGPD8O14715 1765 aaPredicted RBP2.47□□□□□ -2.01
USP28-210ENST00000542033 RGPD5Q99666 1765 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 A0A087WWC5 75 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 BORCS7-ASMTA0A0B4J1R7 106 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 TRAV38-1A0A0B4J264 116 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 A0A0G2JN53 185 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 OR5B21A6NL26 309 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 C15orf65H3BRN8 121 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 SLC17A2O00624 439 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 FGF16O43320 207 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 HCRTR1O43613 425 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 TNFSF13O75888 250 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 YIF1AO95070 293 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 CDS2O95674 445 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 IGKV3-15P01624 115 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 ORM1P02763 201 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 CD14P08571 375 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 SMIM10L2AP0DMW4 78 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 SMIM10L2BP0DMW5 78 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 PSG2P11465 335 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 ATP1B2P14415 290 aaPredicted RBP2.47□□□□□ -2.01
USP28-210ENST00000542033 HIST1H1CP16403 213 aaKnown RBP2.47□□□□□ -2.01
USP28-210ENST00000542033 ZNF19P17023 458 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 ADCYAP1P18509 176 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 HIST1H1TP22492 207 aaPredicted RBP2.47□□□□□ -2.01
USP28-210ENST00000542033 PSMB9P28065 219 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 HTR1FP30939 366 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 SDC2P34741 201 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 RPL22P35268 128 aaKnown RBP2.47□□□□□ -2.01
USP28-210ENST00000542033 CFHR2P36980 270 aa2.47□□□□□ -2.01
USP28-210ENST00000542033 OPRD1P41143 372 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms