RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 SPNP16150 400 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 IGFBP3P17936 291 aaPredicted RBP11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 IL3RAP26951 378 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 BLVRBP30043 206 aaPredicted RBP11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 BDKRB2P30411 391 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 RAB40BQ12829 278 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 DOC2BQ14184 412 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 KLHL22Q53GT1 634 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 GAPTQ8N292 157 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 OR8H1Q8NGG4 311 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 MRPL48Q96GC5 212 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 UBE2E2Q96LR5 201 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 TMEM138Q9NPI0 162 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 PARP11Q9NR21 331 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 MRPS18AQ9NVS2 196 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 FAM53CQ9NYF3 392 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 ORC6Q9Y5N6 252 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 WBP4O75554 376 aaKnown RBP11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 FRMD6-AS1P0C7T7 363 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 ACTBP60709 375 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 RPS11P62280 158 aaKnown RBP eCLIP11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 RUNX1Q01196 453 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 ZNF616Q08AN1 781 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 MRPL28Q13084 256 aaKnown RBP11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 Q3ZCU0 254 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 C19orf54Q5BKX5 351 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 SIGIRRQ6IA17 410 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 LINC00596Q86U02 117 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 HAPLN4Q86UW8 402 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 ZFP41Q8N8Y5 198 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 OR52L2PQ8NGH6 319 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 DLX4Q92988 240 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 MUL1Q969V5 352 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 ANKRD60Q9BZ19 345 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 OR51J1Q9H342 316 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 ETAA1Q9NY74 926 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 VSIG4Q9Y279 399 aa11.96□□□□□ -0.49
CLSTN3-213ENST00000541953 TRBV5-5A0A0J9YX44 114 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 A0A1W2PPK0 400 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 FAM90A10PA6NDY2 464 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 SNTNA6NMZ2 147 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 TXNL1O43396 289 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 CD2P06729 351 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 OR8U8P0C7N1 319 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 PPP1CCP36873 323 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 OR3A3P47888 321 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 PPP3R1P63098 170 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 RAB12Q6IQ22 244 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 RPL22L1Q6P5R6 122 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 NABP2Q9BQ15 211 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 BANF2Q9H503 90 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 FGF20Q9NP95 211 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 TPSG1Q9NRR2 321 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 CLEC2DQ9UHP7 191 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 TRAPPC2LQ9UL33 140 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 ALMS1Q8TCU4 4167 aa11.95□□□□□ -0.5
CLSTN3-213ENST00000541953 IGHV4OR15-8A0A075B7B6 117 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 A0A087WW49 117 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 TRAV41A0A0B4J266 112 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 OVOL1O14753 267 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 OGG1O15527 345 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 SPINT2O43291 252 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 LANCL1O43813 399 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 SAP30O75446 220 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 HLA-DRB1P01911 266 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 GTF2F2P13984 249 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 RAB9AP51151 201 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 RIPK1Q13546 671 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 MORN2Q502X0 79 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 GLIPR1L1Q6UWM5 242 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 MINDY2Q8NBR6 621 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 ARPC1AQ92747 370 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 TAF9BQ9HBM6 251 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 PEX16Q9Y5Y5 336 aa11.94□□□□□ -0.5
CLSTN3-213ENST00000541953 LOC100130705A0A1B0GUX0 176 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 UBE2QL1A1L167 161 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 CIB2O75838 187 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 SC5DO75845 299 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 GP9P14770 177 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 ECSCRQ19T08 205 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 C5orf64Q2M2E5 130 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 CCDC58Q4VC31 144 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 ZFAND6Q6FIF0 208 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 LYPD6Q86Y78 171 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 MRPL30Q8TCC3 161 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 SMIM19Q96E16 107 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 PGLYRP3Q96LB9 341 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 Q96MT0 163 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 S100A13Q99584 98 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 ABHD14AQ9BUJ0 271 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 OR2S2Q9NQN1 319 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 GAB2Q9UQC2 676 aa11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 MRPS28Q9Y2Q9 187 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 RPL36Q9Y3U8 105 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-213ENST00000541953 SAA2-SAA4A0A096LPE2 208 aa11.92□□□□□ -0.5
CLSTN3-213ENST00000541953 MCRIP1C9JLW8 97 aa11.92□□□□□ -0.5
CLSTN3-213ENST00000541953 NBR2O15453 112 aa11.92□□□□□ -0.5
CLSTN3-213ENST00000541953 SAA2P0DJI9 122 aaPredicted RBP11.92□□□□□ -0.5
CLSTN3-213ENST00000541953 OR5H8P0DN80 308 aa11.92□□□□□ -0.5
CLSTN3-213ENST00000541953 EGR2P11161 476 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms