RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 STUB1Q9UNE7 303 aa8.93□□□□□ -0.98
CLSTN3-209ENST00000539982 ERGIC3Q9Y282 383 aa8.93□□□□□ -0.98
CLSTN3-209ENST00000539982 IGHV3-43A0A0B4J1X8 118 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 TMEM30CPA0ZSE6 113 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 ARPC1BO15143 372 aaKnown RBP8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 SLC31A2O15432 143 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 IGHV3-43DP0DP04 118 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 BLVRBP30043 206 aaPredicted RBP8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 ZNF134P52741 427 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 TMED1Q13445 227 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 PIGYQ3MUY2 71 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 CT45A1Q5HYN5 189 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 C6orf141Q5SZD1 244 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 LIN54Q6MZP7 749 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 HAPLN4Q86UW8 402 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 ANKRD13BQ86YJ7 626 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 SERPINA12Q8IW75 414 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 CT45A3Q8NHU0 189 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 UBALD1Q8TB05 177 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 RITA1Q96K30 269 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 IFT22Q9H7X7 185 aa8.92□□□□□ -0.98
CLSTN3-209ENST00000539982 SULT1B1O43704 296 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 LANCL1O43813 399 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 SOX15O60248 233 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 HTR1AP08908 422 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 GABRB1P18505 474 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 ACTBP60709 375 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 SNRPGP62308 76 aaKnown RBP8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 LSAMPQ13449 338 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 RSU1Q15404 277 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 KCTD21Q4G0X4 260 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 C19orf54Q5BKX5 351 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 RBM48Q5RL73 367 aaKnown RBP8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 STEAP3Q658P3 488 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 ASCL4Q6XD76 172 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 ZNF439Q8NDP4 499 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 OR8J1Q8NGP2 316 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 RHOXF1Q8NHV9 184 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 CCDC107Q8WV48 283 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 APH1BQ8WW43 257 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 ZNF251Q9BRH9 671 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 TUBA4BQ9H853 241 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 ZNF581Q9P0T4 197 aa8.91□□□□□ -0.98
CLSTN3-209ENST00000539982 TNCP24821 2201 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 A0A1W2PN81 502 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 RBMY1BA6NDE4 496 aaKnown RBP8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 RBMY1EA6NEQ0 496 aaKnown RBP8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 OR4C45A6NMZ5 311 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 C12orf77C9JDV5 145 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 NBR2O15453 112 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 WBP4O75554 376 aaKnown RBP8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 HTR3BO95264 441 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 MT-ND4P03905 459 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 RBMY1DP0C7P1 496 aaKnown RBP8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 CNTFRP26992 372 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 CHRNA7P36544 502 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 CRIP2P52943 208 aaPredicted RBP8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 RAB40BQ12829 278 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 C5orf64Q2M2E5 130 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 LAIR2Q6ISS4 152 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 PARP16Q8N5Y8 322 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 TCTEX1D1Q8N7M0 179 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 OR10K1Q8NGX5 313 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 CASTOR1Q8WTX7 329 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 TNFAIP8L1Q8WVP5 186 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 RFKQ969G6 155 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 CPNE2Q96FN4 548 aaPredicted RBP8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 Q96MT0 163 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 RSRP1Q9BUV0 290 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 TMED9Q9BVK6 235 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 CST11Q9H112 138 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 KIAA1456Q9P272 454 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 AASSQ9UDR5 926 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 BLOC1S6Q9UL45 172 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 FOXA2Q9Y261 457 aaPredicted RBP8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 ST3GAL6Q9Y274 331 aa8.9□□□□□ -0.98
CLSTN3-209ENST00000539982 HERC2O95714 4834 aa8.9□□□□□ -0.99
CLSTN3-209ENST00000539982 H0Y980 276 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 GABRPO00591 440 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 MAGEB3O15480 346 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 SLC25A17O43808 307 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 OR7C1O76099 320 aaPredicted RBP8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 IGHV3-11P01762 117 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 CSTBP04080 98 aaKnown RBP8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 CRHBPP24387 322 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 ECSCRQ19T08 205 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 TMEM30BQ3MIR4 351 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 NHLRC3Q5JS37 347 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 SLC25A30Q5SVS4 291 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 MEDAGQ5VYS4 303 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 ZNF660Q6AZW8 331 aaPredicted RBP8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 PYHIN1Q6K0P9 492 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 ZNF497Q6ZNH5 498 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 SATL1Q86VE3 508 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 BPIFB6Q8NFQ5 453 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 NPBQ8NG41 125 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 RHOVQ96L33 236 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 GPER1Q99527 375 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 HIPK2Q9H2X6 1198 aa8.89□□□□□ -0.99
CLSTN3-209ENST00000539982 RAB9BQ9NP90 201 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms