RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 OR4F5Q8NH21 305 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 OR4F4Q96R69 305 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 PCGF1Q9BSM1 259 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 SRD5A3Q9H8P0 318 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 FSCN3Q9NQT6 498 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 OR14J1Q9UGF5 321 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 TUSC2O75896 110 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 SRFP11831 508 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 PLA2G5P39877 138 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 PSMB3P49720 205 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 JOSD1Q15040 202 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-237ENST00000539504 P2RY6Q15077 328 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 ADGRG7Q96K78 797 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 PROK2Q9HC23 129 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 FUT9Q9Y231 359 aa9.61□□□□□ -0.87
SYNE1-237ENST00000539504 A0A0G2JMM0 328 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 A0A1W2PPB8 328 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 A0A1W2PRS3 328 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 ARGFXA6NJG6 315 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 KIR3DP1A8MWS1 328 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 RBMXL2O75526 392 aaKnown RBP9.6□□□□□ -0.87
SYNE1-237ENST00000539504 GZMBP10144 247 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 SELLP14151 372 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 APLNRP35414 380 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 PMS2P11Q13670 270 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 TMEM41BQ5BJD5 291 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 TGIF2LXQ8IUE1 241 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 IL22RA2Q969J5 263 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 CRIM1Q9NZV1 1036 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 OR1A1Q9P1Q5 309 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 WASF3Q9UPY6 502 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 DVL1O14640 695 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 MRPL33O75394 65 aaKnown RBP9.6□□□□□ -0.87
SYNE1-237ENST00000539504 PMP22Q01453 160 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 MEF2BQ02080 365 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-237ENST00000539504 ZFP36L1Q07352 338 aaKnown RBP9.6□□□□□ -0.87
SYNE1-237ENST00000539504 SLC38A11Q08AI6 406 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 DAZAP2Q15038 168 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-237ENST00000539504 C20orf204Q6ZNR8 217 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 OR10V1Q8NGI7 309 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 OR5R1Q8NH85 324 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 MBD3L1Q8WWY6 194 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 WFIKKN1Q96NZ8 548 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 P2RX4Q99571 388 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 ELOVL1Q9BW60 279 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 EXPH5Q8NEV8 1989 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 DIDO1Q9BTC0 2240 aaKnown RBP9.6□□□□□ -0.87
SYNE1-237ENST00000539504 IGHV1-45A0A0A0MS14 117 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 LRRC3CA6NJW4 275 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 MMP7P09237 267 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-237ENST00000539504 ARF1P84077 181 aaKnown RBP9.6□□□□□ -0.87
SYNE1-237ENST00000539504 ESPL1Q14674 2120 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 MRPL14Q6P1L8 145 aaKnown RBP9.6□□□□□ -0.87
SYNE1-237ENST00000539504 ZNF664Q8N3J9 261 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 PINX1Q96BK5 328 aaKnown RBP9.6□□□□□ -0.87
SYNE1-237ENST00000539504 OR51I2Q9H344 312 aa9.6□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A10PA6NDY2 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A18PA6NE21 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A16PA6NEW6 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A20PA6NIJ5 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A8PA6NJQ4 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A7PA6NKC0 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 ZNF716A6NP11 495 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A22PA8MWA6 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A12PA8MX19 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A5PA8MXJ8 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A23PA8MXZ1 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A15PP0C7V4 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A13PP0C7W8 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A14PP0C7W9 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 FAM90A24PP0C7X0 464 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 GDF1P27539 372 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 LBX1P52954 281 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 SERF2P84101 59 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 MRPL30Q8TCC3 161 aaKnown RBP9.59□□□□□ -0.87
SYNE1-237ENST00000539504 TCAPO15273 167 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 RFPL3SP0C7P2 107 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 COL19A1Q14993 1142 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 LRRC75BQ2VPJ9 315 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 SP5Q6BEB4 398 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-237ENST00000539504 PCED1AQ9H1Q7 454 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 CDH20Q9HBT6 801 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 R4GN57 208 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 IGHV3-64DA0A0J9YX35 117 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 SCGB1D1O95968 90 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 TAF15Q92804 592 aaKnown RBP eCLIP9.59□□□□□ -0.87
SYNE1-237ENST00000539504 PSMG3Q9BT73 122 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-237ENST00000539504 WDR61Q9GZS3 305 aaKnown RBP9.59□□□□□ -0.87
SYNE1-237ENST00000539504 AURKAIP1Q9NWT8 199 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-237ENST00000539504 TRAPPC2LQ9UL33 140 aa9.59□□□□□ -0.87
SYNE1-237ENST00000539504 COX6A1P12074 109 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 BMP5P22003 454 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 DNLZQ5SXM8 178 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 PCSK4Q6UW60 755 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF295-AS1Q8N0V1 137 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 C1QTNF5Q9BXJ0 243 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 RIMS4Q9H426 269 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF552Q9H707 407 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-237ENST00000539504 MRPS17Q9Y2R5 130 aaKnown RBP9.58□□□□□ -0.88
SYNE1-237ENST00000539504 PIGBOS1A0A0B4J2F0 54 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms