RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 PPP1CCP36873 323 aaKnown RBP12.67□□□□□ -0.38
RPAIN-206ENST00000539417 PRRX1P54821 245 aa12.67□□□□□ -0.38
RPAIN-206ENST00000539417 CT45A1Q5HYN5 189 aa12.67□□□□□ -0.38
RPAIN-206ENST00000539417 TMEM219Q86XT9 240 aa12.67□□□□□ -0.38
RPAIN-206ENST00000539417 IZUMO1Q8IYV9 350 aa12.67□□□□□ -0.38
RPAIN-206ENST00000539417 DTX3Q8N9I9 347 aa12.67□□□□□ -0.38
RPAIN-206ENST00000539417 CT45A3Q8NHU0 189 aa12.67□□□□□ -0.38
RPAIN-206ENST00000539417 GCDHQ92947 438 aaPredicted RBP12.67□□□□□ -0.38
RPAIN-206ENST00000539417 PARP12Q9H0J9 701 aaKnown RBP12.67□□□□□ -0.38
RPAIN-206ENST00000539417 RHBDL2Q9NX52 303 aa12.67□□□□□ -0.38
RPAIN-206ENST00000539417 KCNIP1Q9NZI2 227 aa12.67□□□□□ -0.38
RPAIN-206ENST00000539417 ZNF230Q9UIE0 474 aaPredicted RBP12.67□□□□□ -0.38
RPAIN-206ENST00000539417 IGKV1-6A0A0C4DH72 117 aa12.66□□□□□ -0.38
RPAIN-206ENST00000539417 LEUTXA8MZ59 168 aa12.66□□□□□ -0.38
RPAIN-206ENST00000539417 AANATQ16613 207 aa12.66□□□□□ -0.38
RPAIN-206ENST00000539417 MORN2Q502X0 79 aa12.66□□□□□ -0.38
RPAIN-206ENST00000539417 TRAT1Q6PIZ9 186 aa12.66□□□□□ -0.38
RPAIN-206ENST00000539417 GPR141Q7Z602 305 aa12.66□□□□□ -0.38
RPAIN-206ENST00000539417 C12orf4Q9NQ89 552 aa12.66□□□□□ -0.38
RPAIN-206ENST00000539417 OR2S2Q9NQN1 319 aa12.66□□□□□ -0.38
RPAIN-206ENST00000539417 GNG12Q9UBI6 72 aa12.66□□□□□ -0.38
RPAIN-206ENST00000539417 IGKV1D-8A0A087WSZ0 117 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 METTL21EPA6NDL7 271 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 A6NDX4 124 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 FCGR3AP08637 254 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 MDKP21741 143 aaPredicted RBP12.65□□□□□ -0.38
RPAIN-206ENST00000539417 RANBP1P43487 201 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 REG1BP48304 166 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 HLA-DRB3P79483 266 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 ZNF260Q3ZCT1 412 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 CDNFQ49AH0 187 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 AWAT1Q58HT5 328 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 OR5R1Q8NH85 324 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 IL1F10Q8WWZ1 152 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 SLC25A46Q96AG3 418 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 OR1A1Q9P1Q5 309 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 SPATA2Q9UM82 520 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 TCF19Q9Y242 345 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 A0A1W2PPI3 338 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 BTBD17A6NE02 478 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 TMEM235A6NFC5 223 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 CD3GP09693 182 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 PTHLHP12272 177 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 HERPUD1Q15011 391 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 Q6ZSV7 163 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 SLC25A48Q6ZT89 311 aaKnown RBP12.65□□□□□ -0.38
RPAIN-206ENST00000539417 ZNF554Q86TJ5 538 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 LINC00311Q8N616 119 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 OR10X1Q8NGY0 326 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 SPATA3Q8NHX4 192 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 ST6GALNAC6Q969X2 333 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 RIMS4Q9H426 269 aaPredicted RBP12.65□□□□□ -0.38
RPAIN-206ENST00000539417 NDUFA13Q9P0J0 144 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 ETV7Q9Y603 341 aa12.65□□□□□ -0.38
RPAIN-206ENST00000539417 SSX5O60225 188 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 COMPP49747 757 aaPredicted RBP12.64□□□□□ -0.39
RPAIN-206ENST00000539417 DYNLT3P51808 116 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 HTD2P86397 168 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 MADCAM1Q13477 382 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 SPCS2Q15005 226 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 MOB1BQ7L9L4 216 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 CLVS1Q8IUQ0 354 aaPredicted RBP12.64□□□□□ -0.39
RPAIN-206ENST00000539417 ODF3L1Q8IXM7 274 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 C8orf31Q8N9H6 132 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 NUDCD2Q8WVJ2 157 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 CFHR4Q92496 578 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 TOMM40LQ969M1 308 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 RPEQ96AT9 228 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 GALMQ96C23 342 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 OCSTAMPQ9BR26 566 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 ABCB10Q9NRK6 738 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 ABRACLQ9P1F3 81 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 JPT1Q9UK76 154 aa12.64□□□□□ -0.39
RPAIN-206ENST00000539417 TIMM23O14925 209 aa12.63□□□□□ -0.39
RPAIN-206ENST00000539417 GSTT2P0CG29 244 aa12.63□□□□□ -0.39
RPAIN-206ENST00000539417 GSTT2BP0CG30 244 aa12.63□□□□□ -0.39
RPAIN-206ENST00000539417 RAG2P55895 527 aa12.63□□□□□ -0.39
RPAIN-206ENST00000539417 SCAND1P57086 179 aa12.63□□□□□ -0.39
RPAIN-206ENST00000539417 ARFRP1Q13795 201 aa12.63□□□□□ -0.39
RPAIN-206ENST00000539417 DRAM1Q8N682 238 aa12.63□□□□□ -0.39
RPAIN-206ENST00000539417 DCSTAMPQ9H295 470 aa12.63□□□□□ -0.39
RPAIN-206ENST00000539417 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.63□□□□□ -0.39
RPAIN-206ENST00000539417 SIGLEC9Q9Y336 463 aa12.63□□□□□ -0.39
RPAIN-206ENST00000539417 AMMECR1Q9Y4X0 333 aaPredicted RBP12.63□□□□□ -0.39
RPAIN-206ENST00000539417 TRAV18A0A075B6X5 111 aa12.62□□□□□ -0.39
RPAIN-206ENST00000539417 IGHV3-72A0A0B4J1Y9 119 aa12.62□□□□□ -0.39
RPAIN-206ENST00000539417 SERPINE3A8MV23 424 aa12.62□□□□□ -0.39
RPAIN-206ENST00000539417 ZNF736B4DX44 427 aaPredicted RBP12.62□□□□□ -0.39
RPAIN-206ENST00000539417 TRDCB7Z8K6 153 aa12.62□□□□□ -0.39
RPAIN-206ENST00000539417 HSD17B6O14756 317 aa12.62□□□□□ -0.39
RPAIN-206ENST00000539417 YPEL1O60688 119 aa12.62□□□□□ -0.39
RPAIN-206ENST00000539417 CRYBA1P05813 215 aa12.62□□□□□ -0.39
RPAIN-206ENST00000539417 CEACAM3P40198 252 aa12.62□□□□□ -0.39
RPAIN-206ENST00000539417 RPL5P46777 297 aaKnown RBP12.62□□□□□ -0.39
RPAIN-206ENST00000539417 TMEM30BQ3MIR4 351 aa12.62□□□□□ -0.39
RPAIN-206ENST00000539417 IGSF11Q5DX21 431 aa12.62□□□□□ -0.39
RPAIN-206ENST00000539417 HACD4Q5VWC8 232 aa12.62□□□□□ -0.39
RPAIN-206ENST00000539417 DHRS7BQ6IAN0 325 aaPredicted RBP12.62□□□□□ -0.39
RPAIN-206ENST00000539417 Q6ZS46 218 aa12.62□□□□□ -0.39
RPAIN-206ENST00000539417 SAMD12Q8N8I0 201 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms