RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 MEGF8Q7Z7M0 2845 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 IGHV1-3A0A0C4DH29 117 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 M0QZK8 103 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 DENRO43583 198 aaKnown RBP11.77□□□□□ -0.53
USP28-204ENST00000537642 ARSBP15848 533 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 TMEM11P17152 192 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 BLVRBP30043 206 aaPredicted RBP11.77□□□□□ -0.53
USP28-204ENST00000537642 HES1Q14469 280 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 RAB11BQ15907 218 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 CT45A1Q5HYN5 189 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 OR2W3Q7Z3T1 314 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 MOB3BQ86TA1 216 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 ZNF554Q86TJ5 538 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 CT45A3Q8NHU0 189 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 NDUFB11Q9NX14 153 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 KCNIP1Q9NZI2 227 aa11.77□□□□□ -0.53
USP28-204ENST00000537642 IGHV3-72A0A0B4J1Y9 119 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 ADARB2-AS1A8MUL3 147 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 SOCS1O15524 211 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 MRPS14O60783 128 aaKnown RBP11.76□□□□□ -0.53
USP28-204ENST00000537642 IGKV1D-33P01593 117 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 IGKV1-33P01594 117 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 IL3RAP26951 378 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 ZNF137PP52743 207 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 CLDN12P56749 244 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 EBI3Q14213 229 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 HNF4GQ14541 408 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 GNMTQ14749 295 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 NSUN5P1Q3KNT7 163 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 MORN2Q502X0 79 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 CD200R1LQ6Q8B3 271 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 Q6ZPA2 131 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 FAM89BQ8N5H3 189 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 OR52L2PQ8NGH6 319 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 RTN4IP1Q8WWV3 396 aaPredicted RBP11.76□□□□□ -0.53
USP28-204ENST00000537642 CITED2Q99967 270 aaPredicted RBP11.76□□□□□ -0.53
USP28-204ENST00000537642 Q9H521 79 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 OR2S2Q9NQN1 319 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 V9GY05 133 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 NOTCH1P46531 2555 aa11.76□□□□□ -0.53
USP28-204ENST00000537642 SHISA3A0PJX4 238 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 FOXI3A8MTJ6 420 aaPredicted RBP11.75□□□□□ -0.53
USP28-204ENST00000537642 KCNAB3O43448 404 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 WIPF1O43516 503 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 RRP9O43818 475 aaKnown RBP11.75□□□□□ -0.53
USP28-204ENST00000537642 NAPSAO96009 420 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 HTD2P86397 168 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 HMGN3Q15651 99 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 C9orf152Q5JTZ5 239 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 UBE2UQ5VVX9 321 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 ZNF880Q6PDB4 577 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 NDUFA11Q86Y39 141 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 IZUMO1Q8IYV9 350 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 SPARTQ8N0X7 666 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 SVOPQ8N4V2 548 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 C5orf56Q8N8D9 126 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 OR5AU1Q8NGC0 362 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 OR51D1Q8NGF3 324 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 FAM3DQ96BQ1 224 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 URM1Q9BTM9 101 aaKnown RBP11.75□□□□□ -0.53
USP28-204ENST00000537642 PLEKHJ1Q9NW61 149 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 JPT1Q9UK76 154 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 PLXNB1O43157 2135 aa11.75□□□□□ -0.53
USP28-204ENST00000537642 TRAV1-2A0A0B4J238 106 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 TRDV1A0A1B0GX56 115 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 LDLRAD4O15165 306 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 FGF16O43320 207 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 PPP1CCP36873 323 aaKnown RBP11.74□□□□□ -0.53
USP28-204ENST00000537642 PSMD7P51665 324 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 TMEM50BP56557 158 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 OR10A3P58181 314 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 DEFA6Q01524 100 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 PLA2G7Q13093 441 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 C2orf76Q3KRA6 126 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 HES5Q5TA89 166 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 STEAP3Q658P3 488 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 C10orf99Q6UWK7 81 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 CENPVQ7Z7K6 275 aaPredicted RBP11.74□□□□□ -0.53
USP28-204ENST00000537642 Q8N6K4 173 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 RBMXL1Q96E39 390 aaKnown RBP11.74□□□□□ -0.53
USP28-204ENST00000537642 EAF1Q96JC9 268 aaPredicted RBP11.74□□□□□ -0.53
USP28-204ENST00000537642 YTHDF1Q9BYJ9 559 aaKnown RBP11.74□□□□□ -0.53
USP28-204ENST00000537642 STEAP1Q9UHE8 339 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 AK3Q9UIJ7 227 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 LRRC42Q9Y546 428 aa11.74□□□□□ -0.53
USP28-204ENST00000537642 TRBV6-6A0A0A6YYG2 114 aa11.73□□□□□ -0.53
USP28-204ENST00000537642 TMEM272A0A1B0GTI8 110 aa11.73□□□□□ -0.53
USP28-204ENST00000537642 ZNF736B4DX44 427 aaPredicted RBP11.73□□□□□ -0.53
USP28-204ENST00000537642 YPEL1O60688 119 aa11.73□□□□□ -0.53
USP28-204ENST00000537642 OPN1MWP04001 364 aa11.73□□□□□ -0.53
USP28-204ENST00000537642 OPN1MW2P0DN77 364 aa11.73□□□□□ -0.53
USP28-204ENST00000537642 OPN1MW3P0DN78 364 aa11.73□□□□□ -0.53
USP28-204ENST00000537642 CD1BP29016 333 aa11.73□□□□□ -0.53
USP28-204ENST00000537642 VEGFCP49767 419 aa11.73□□□□□ -0.53
USP28-204ENST00000537642 PRKDCP78527 4128 aaKnown RBP11.73□□□□□ -0.53
USP28-204ENST00000537642 CD83Q01151 205 aa11.73□□□□□ -0.53
USP28-204ENST00000537642 TCTEX1D4Q5JR98 221 aa11.73□□□□□ -0.53
USP28-204ENST00000537642 LY6G6FQ5SQ64 297 aa11.73□□□□□ -0.53
USP28-204ENST00000537642 TGIF2LXQ8IUE1 241 aa11.73□□□□□ -0.53
USP28-204ENST00000537642 ODF3L1Q8IXM7 274 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms