RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 GLAP06280 429 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 ZNF44P15621 663 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 PIGPP57054 158 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 DSCR9P59020 149 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 EXOSC2Q13868 293 aaKnown RBP9.98□□□□□ -0.81
CLIP1-208ENST00000537004 RBM39Q14498 530 aaKnown RBP9.98□□□□□ -0.81
CLIP1-208ENST00000537004 ABCA11PQ4W5N1 156 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 CLLU1Q5K131 121 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 C11orf87Q6NUJ2 197 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 Q6P435 159 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 TMEM65Q6PI78 240 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 Q6ZR03 302 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 ZNF546Q86UE3 836 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 OR8H3Q8N146 312 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 MRPL30Q8TCC3 161 aaKnown RBP9.98□□□□□ -0.81
CLIP1-208ENST00000537004 BPESC1Q9GZL8 116 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 ARL6Q9H0F7 186 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 RDH8Q9NYR8 311 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 TAAR3PQ9P1P4 343 aa9.98□□□□□ -0.81
CLIP1-208ENST00000537004 FBXO9Q9UK97 447 aaPredicted RBP9.98□□□□□ -0.81
CLIP1-208ENST00000537004 FBN1P35555 2871 aaKnown RBP9.98□□□□□ -0.81
CLIP1-208ENST00000537004 IGHV4-61A0A0C4DH41 118 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 KIR2DS1A0A191URI9 304 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 SCO1O75880 301 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 NXPH2O95156 264 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 SLC25A4P12235 298 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 ZNF250P15622 560 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 AADACP22760 399 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 RBMXP38159 391 aaKnown RBP9.97□□□□□ -0.81
CLIP1-208ENST00000537004 KIR2DS4P43632 304 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 PDLIM4P50479 330 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 KLF3P57682 345 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-208ENST00000537004 HERV-K104P61576 105 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 KIR2DS1Q14954 304 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 TMEM249Q2WGJ8 235 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 C5orf24Q7Z6I8 188 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 OR5T2Q8NGG2 359 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 NMES1Q9C002 83 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 IGLV3-9A0A075B6K5 115 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 TRBV6-6A0A0A6YYG2 114 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 VWC2LB2RUY7 222 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 TRDCB7Z8K6 153 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 OR2H2O95918 312 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 CFDP00746 253 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-208ENST00000537004 PPYP01298 95 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 SCTP09683 121 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 SLC25A16P16260 332 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 UCP3P55916 312 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 CCL8P80075 99 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 CYCSP99999 105 aaKnown RBP9.97□□□□□ -0.81
CLIP1-208ENST00000537004 AANATQ16613 207 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 METTL8Q9H825 291 aaKnown RBP9.97□□□□□ -0.81
CLIP1-208ENST00000537004 MSL2Q9HCI7 577 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 SLC2A9Q9NRM0 540 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 C1orf123Q9NWV4 160 aa9.97□□□□□ -0.81
CLIP1-208ENST00000537004 MPTX1A8MV57 137 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 SIRPB1O00241 398 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 SLC33A1O00400 549 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-208ENST00000537004 RP2O75695 350 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 TK1P04183 234 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 ACAA1P09110 424 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-208ENST00000537004 ATF4P18848 351 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-208ENST00000537004 USF1P22415 310 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-208ENST00000537004 COL8A2P25067 703 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 PSMB6P28072 239 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 LOXL1Q08397 574 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-208ENST00000537004 HERPUD1Q15011 391 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 ZNF146Q15072 292 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 PHLDA2Q53GA4 152 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 PAN3Q58A45 887 aaKnown RBP9.96□□□□□ -0.81
CLIP1-208ENST00000537004 SPIN3Q5JUX0 258 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 COMMD7Q86VX2 200 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 C11orf53Q8IXP5 236 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 POC1AQ8NBT0 407 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 THAP6Q8TBB0 222 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 NEU4Q8WWR8 484 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-208ENST00000537004 RTN4IP1Q8WWV3 396 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-208ENST00000537004 PIMREGQ9BSJ6 248 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 MS4A5Q9H3V2 200 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 HES4Q9HCC6 221 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 UBQLN2Q9UHD9 624 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 TNFSF18Q9UNG2 199 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 MAB21L2Q9Y586 359 aa9.96□□□□□ -0.81
CLIP1-208ENST00000537004 SH2D1BO14796 132 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 HOXB5P09067 269 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 MDH2P40926 338 aaKnown RBP9.95□□□□□ -0.82
CLIP1-208ENST00000537004 ATXN7L3Q14CW9 347 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-208ENST00000537004 PRAMEF6Q5VXH4 476 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 FIP1L1Q6UN15 594 aaKnown RBP9.95□□□□□ -0.82
CLIP1-208ENST00000537004 ZNF826PQ6ZT77 177 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-208ENST00000537004 OR10C1Q96KK4 312 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 RSRP1Q9BUV0 290 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 TLNRD1Q9H1K6 362 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 NAA60Q9H7X0 242 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 RASL12Q9NYN1 266 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 MBD2Q9UBB5 411 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 KCNIP3Q9Y2W7 256 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 DNHD1Q96M86 4753 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 IGKV1-6A0A0C4DH72 117 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms