RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 IGHV3OR15-7A0A075B7D8 119 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 A0A0A6YYH2 397 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 A0A0B4J2C4 111 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 DAPL1A0PJW8 107 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 OR6C70A6NIJ9 312 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 A6NJ64 397 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 F5H768 121 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 AZIN1O14977 448 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 PDYNP01213 254 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 CTLA4P16410 223 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 UGT2B7P16662 529 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 AGTR1P30556 359 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 KLF3P57682 345 aaPredicted RBP1.56□□□□□ -2.16
CD44-234ENST00000531873 SMAGPQ0VAQ4 97 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 MED21Q13503 144 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 C1DQ13901 141 aaKnown RBP1.56□□□□□ -2.16
CD44-234ENST00000531873 CLEC12BQ2HXU8 276 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 KRTAP25-1Q3LHN0 102 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 ZCWPW2Q504Y3 356 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 MESTQ5EB52 335 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 ZNF660Q6AZW8 331 aaPredicted RBP1.56□□□□□ -2.16
CD44-234ENST00000531873 WDR59Q6PJI9 974 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 CYHR1Q6ZMK1 362 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 FAM19A5Q7Z5A7 132 aaPredicted RBP1.56□□□□□ -2.16
CD44-234ENST00000531873 RPRMLQ8N4K4 120 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 ZNF680Q8NEM1 530 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 OR5K1Q8NHB7 308 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 CMTM5Q96DZ9 223 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 SLC22A4Q9H015 551 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 NSRP1Q9H0G5 558 aaKnown RBP1.56□□□□□ -2.16
CD44-234ENST00000531873 METTL9Q9H1A3 318 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 MS4A6AQ9H2W1 248 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 TMEM216Q9P0N5 145 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 OR5V1Q9UGF6 321 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 ZNF443Q9Y2A4 671 aaPredicted RBP1.56□□□□□ -2.16
CD44-234ENST00000531873 ZSWIM8A7E2V4 1837 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 NCOA1Q15788 1441 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 FAM135BQ49AJ0 1406 aa1.56□□□□□ -2.16
CD44-234ENST00000531873 PRG4Q92954 1404 aaPredicted RBP1.56□□□□□ -2.16
CD44-234ENST00000531873 IGKV1D-37A0A075B6S9 117 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 A6NED7 52 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 F5H5T6 163 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 BIRC5O15392 142 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 ARL6IP5O75915 188 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 GPR75O95800 540 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 IGLV3-19P01714 112 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 IGHV3-53P01767 116 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 COX5BP10606 129 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 MLNP12872 115 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 HRES1P13985 223 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 FOXA1P55317 472 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 PDGFRLQ15198 375 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 SLC9A3R2Q15599 337 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 BCL2A1Q16548 175 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 SLC36A2Q495M3 483 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 ZFAND6Q6FIF0 208 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 Q6ZRU5 148 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 CPNE9Q8IYJ1 553 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 C3orf22Q8N5N4 141 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 TMEM75Q8N9X5 138 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 FER1L6-AS1Q8NA97 138 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 OR11G2Q8NGC1 345 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 ZNF721Q8TF20 911 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 TNFAIP8L1Q8WVP5 186 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.55□□□□□ -2.16
CD44-234ENST00000531873 APOBEC3DQ96AK3 386 aaPredicted RBP1.55□□□□□ -2.16
CD44-234ENST00000531873 OTUB2Q96DC9 234 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 RTBDNQ9BSG5 229 aaPredicted RBP1.55□□□□□ -2.16
CD44-234ENST00000531873 TMEM208Q9BTX3 173 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 GNB1LQ9BYB4 327 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 DRC3Q9H069 523 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 UBQLN4Q9NRR5 601 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 NKIRAS1Q9NYS0 192 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 RPUSD1Q9UJJ7 312 aaKnown RBP1.55□□□□□ -2.16
CD44-234ENST00000531873 LINC00588Q9Y4M8 146 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 TRAPPC1Q9Y5R8 145 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 V9GYY5 206 aaPredicted RBP1.55□□□□□ -2.16
CD44-234ENST00000531873 DHX57Q6P158 1386 aaKnown RBP1.55□□□□□ -2.16
CD44-234ENST00000531873 RIMS2Q9UQ26 1411 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 SHANK2Q9UPX8 1470 aa1.55□□□□□ -2.16
CD44-234ENST00000531873 ARGFXA6NJG6 315 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 C4orf51C9J302 202 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 DEXIO95424 95 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 IGHMP01871 453 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 RNASE2P10153 161 aaKnown RBP1.54□□□□□ -2.16
CD44-234ENST00000531873 CD99P14209 185 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 PRPS1L1P21108 318 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 GADD45AP24522 165 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 PSMB3P49720 205 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 SULT1A2P50226 295 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 UBE2IP63279 158 aaKnown RBP1.54□□□□□ -2.16
CD44-234ENST00000531873 DHRS2Q13268 280 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 TRMT12Q53H54 448 aaKnown RBP1.54□□□□□ -2.16
CD44-234ENST00000531873 Q6ZQT7 251 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 LRP11Q86VZ4 500 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 LYPD6Q86Y78 171 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 MNS1Q8NEH6 495 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 SPPL2BQ8TCT7 592 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 ASB13Q8WXK3 278 aa1.54□□□□□ -2.16
CD44-234ENST00000531873 PACRGQ96M98 296 aaPredicted RBP1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms