RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CDK6Q00534 326 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 ZNF763Q0D2J5 394 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 FABP9Q0Z7S8 132 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 HTR4Q13639 388 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 GGTLC2Q14390 218 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 QPRTQ15274 297 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 ZNF181Q2M3W8 571 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 LDLRAD2Q5SZI1 272 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 C1orf194Q5T5A4 169 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 TPTE2P1Q5T6R2 138 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 C1orf195Q5TG92 126 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 PRSS54Q6PEW0 395 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 TBPL2Q6SJ96 375 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 HIST2H3AQ71DI3 136 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 PNKDQ8N490 385 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 PRELID2Q8N945 189 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 WDR31Q8NA23 367 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 KLHL30-AS1Q8NEE0 82 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 DUSP18Q8NEJ0 188 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 TSTD1Q8NFU3 115 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 OR52L1Q8NGH7 329 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 OR1L8Q8NGR8 309 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 OR9G1Q8NH87 305 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 PIFOQ8TCI5 191 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 LCN9Q8WX39 176 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 DDIT4LQ96D03 193 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 LINC00477Q96M19 166 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 C1orf147Q96MC9 270 aaPredicted RBP2.45□□□□□ -2.02
CD44-229ENST00000528672 ZNF681Q96N22 645 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 TP53RKQ96S44 253 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 GABRG3Q99928 467 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 ZNF649Q9BS31 505 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 NDFIP1Q9BT67 221 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 PAXXQ9BUH6 204 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 PRO1933Q9H354 126 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 VSIRQ9H7M9 311 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 ZNF702PQ9H963 129 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 AIG1Q9NVV5 245 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 DMAC2Q9NW81 257 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 DOK5Q9P104 306 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 ST3GAL6Q9Y274 331 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 CARHSP1Q9Y2V2 147 aaKnown RBP2.45□□□□□ -2.02
CD44-229ENST00000528672 V9GYS6 101 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 KMT2BQ9UMN6 2715 aaPredicted RBP2.45□□□□□ -2.02
CD44-229ENST00000528672 COL2A1P02458 1487 aaPredicted RBP2.45□□□□□ -2.02
CD44-229ENST00000528672 TEX14Q8IWB6 1497 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 TNS3Q68CZ2 1445 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 FAM166BA8MTA8 275 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 CLDN25C9JDP6 229 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 C12orf77C9JDV5 145 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 F5H5K5 113 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 J3QRK9 145 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 FABP7O15540 132 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 RBFOX2O43251 390 aaKnown RBP eCLIP2.44□□□□□ -2.02
CD44-229ENST00000528672 MRPS14O60783 128 aaKnown RBP2.44□□□□□ -2.02
CD44-229ENST00000528672 CLDN11O75508 207 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 MPC2O95563 127 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 IGHV3-23P01764 117 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 APODP05090 189 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 PSG2P11465 335 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 COX7A1P24310 79 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 ETV6P41212 452 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 DIO3P55073 304 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 TAS2R19P59542 299 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 HSPE1P61604 102 aaKnown RBP2.44□□□□□ -2.02
CD44-229ENST00000528672 DCDP81605 110 aaKnown RBP2.44□□□□□ -2.02
CD44-229ENST00000528672 HIST1H1AQ02539 215 aaPredicted RBP2.44□□□□□ -2.02
CD44-229ENST00000528672 ZNF92Q03936 586 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 EGFEM1PQ0D2K5 195 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 ST3GAL4Q11206 333 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 ARFRP1Q13795 201 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 OR8B8Q15620 311 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 TMEM241Q24JQ0 296 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 SLC25A35Q3KQZ1 300 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 ATP6AP1LQ52LC2 224 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 MESTQ5EB52 335 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 FAM74A1Q5RGS3 127 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 VAX1Q5SQQ9 334 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 TMEM69Q5SWH9 247 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 LCE3CQ5T5A8 94 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 TEX36Q5VZQ5 186 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 ZFAND6Q6FIF0 208 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 ALKAL1Q6UXT8 129 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 C12orf54Q6X4T0 127 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 FAM231DQ6ZW35 169 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 TCTE3Q8IZS6 198 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.44□□□□□ -2.02
CD44-229ENST00000528672 NKAPP1Q8N9T2 125 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 OR13C8Q8NGS7 320 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 OR10R2Q8NGX6 335 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 MCFD2Q8NI22 146 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 ZNF420Q8TAQ5 688 aaPredicted RBP2.44□□□□□ -2.02
CD44-229ENST00000528672 DOK4Q8TEW6 326 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 S100ZQ8WXG8 99 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 SLC7A6Q92536 515 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 TMEM54Q969K7 222 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 ARL11Q969Q4 196 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 DIRAS2Q96HU8 199 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 DOHHQ9BU89 302 aa2.44□□□□□ -2.02
CD44-229ENST00000528672 SLC17A9Q9BYT1 436 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms