RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 C16orf82Q7Z2V1 217 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 C1QL4Q86Z23 238 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 OR8H3Q8N146 312 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 C5orf56Q8N8D9 126 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 RTN4IP1Q8WWV3 396 aaPredicted RBP8.44□□□□□ -1.06
CD44-227ENST00000528086 THRSPQ92748 146 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 CREB3L1Q96BA8 519 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 EAF1Q96JC9 268 aaPredicted RBP8.44□□□□□ -1.06
CD44-227ENST00000528086 RITA1Q96K30 269 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 PCDHB16Q9NRJ7 776 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 TRAPPC2LQ9UL33 140 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 KCNK7Q9Y2U2 307 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 A0A0B4J203 849 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 HSD17B6O14756 317 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 BPNT1O95861 308 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 IGKV1D-33P01593 117 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 IGKV1-33P01594 117 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 OPN1MWP04001 364 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 CSF1P09603 554 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 UBBP0CG47 229 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 OPN1MW2P0DN77 364 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 OPN1MW3P0DN78 364 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 CALRP27797 417 aaKnown RBP8.43□□□□□ -1.06
CD44-227ENST00000528086 PPP1CCP36873 323 aaKnown RBP8.43□□□□□ -1.06
CD44-227ENST00000528086 VDAC2P45880 294 aaPredicted RBP8.43□□□□□ -1.06
CD44-227ENST00000528086 C2orf68Q2NKX9 166 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 MOGAT2Q3SYC2 334 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 CCDC144NLQ6NUI1 221 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 ZNF367Q7RTV3 350 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 IZUMO1Q8IYV9 350 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 SPARTQ8N0X7 666 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 SVOPQ8N4V2 548 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 OR51D1Q8NGF3 324 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 OR6M1Q8NGM8 313 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 KCNG3Q8TAE7 436 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 NOL4LQ96MY1 436 aaPredicted RBP8.43□□□□□ -1.06
CD44-227ENST00000528086 ZNF251Q9BRH9 671 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 TMEM59Q9BXS4 323 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 NDUFB11Q9NX14 153 aa8.43□□□□□ -1.06
CD44-227ENST00000528086 IGKV1-6A0A0C4DH72 117 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 TMEM272A0A1B0GTI8 110 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 G3V4G9 280 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 CCRL2O00421 344 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 PROP1O75360 226 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 CA11O75493 328 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 BLVRBP30043 206 aaPredicted RBP8.42□□□□□ -1.06
CD44-227ENST00000528086 HSPA13P48723 471 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 RAB7AP51149 207 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 F2RL1P55085 397 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 NSUN5P1Q3KNT7 163 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 C2orf76Q3KRA6 126 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 Q3ZCU0 254 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 UBE2UQ5VVX9 321 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 C18orf65Q6ZTR6 163 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 PRR18Q8N4B5 295 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 Q8N9W7 124 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 OR5AU1Q8NGC0 362 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 OR10X1Q8NGY0 326 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 CST11Q9H112 138 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 IFI27L2Q9H2X8 130 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 VCX3BQ9H321 246 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 AK3Q9UIJ7 227 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 LINC00527Q9UJ94 153 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 MOB4Q9Y3A3 225 aa8.42□□□□□ -1.06
CD44-227ENST00000528086 AMMECR1Q9Y4X0 333 aaPredicted RBP8.42□□□□□ -1.06
CD44-227ENST00000528086 DNAH9Q9NYC9 4486 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 TRBV6-6A0A0A6YYG2 114 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 TRDV1A0A1B0GX56 115 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 GAPDHP04406 335 aaKnown RBP8.41□□□□□ -1.06
CD44-227ENST00000528086 FAM106CPP0CH98 169 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 TMEM11P17152 192 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 MNDAP41218 407 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 OR3A3P47888 321 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 GABARAPL2P60520 117 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 TRAM1Q15629 374 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 BEAN1Q3B7T3 259 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 C6orf183Q5T699 404 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 KPRPQ5T749 579 aaPredicted RBP8.41□□□□□ -1.06
CD44-227ENST00000528086 HES5Q5TA89 166 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 SAMD5Q5TGI4 173 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 OR2W3Q7Z3T1 314 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 MOB3BQ86TA1 216 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 ZNF329Q86UD4 541 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 NDUFA11Q86Y39 141 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 FAM3DQ96BQ1 224 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 ARHGAP5-AS1Q96IT6 56 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 AGMATQ9BSE5 352 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 OR2S2Q9NQN1 319 aa8.41□□□□□ -1.06
CD44-227ENST00000528086 TRAV1-2A0A0B4J238 106 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 SMIM30A4D0T7 59 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 RAB27BO00194 218 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 SPINT2O43291 252 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 FGF16O43320 207 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 LANCL1O43813 399 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 YPEL1O60688 119 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 IGHG2P01859 326 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 ARSBP15848 533 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 PSMA1P25786 263 aaKnown RBP8.4□□□□□ -1.06
CD44-227ENST00000528086 CNTFRP26992 372 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 CD1BP29016 333 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms