RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ECI1P42126 302 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 GNG10P50151 68 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 ZNF137PP52743 207 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 RAB25P57735 213 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 SPHARQ15513 63 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 ACSM3Q53FZ2 586 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 C9orf152Q5JTZ5 239 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 C9orf66Q5T8R8 295 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 RAB12Q6IQ22 244 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 C8orf86Q6ZUL3 223 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 OR2W3Q7Z3T1 314 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 IZUMO1Q8IYV9 350 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 TMEM104Q8NE00 496 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 KLHL30-AS1Q8NEE0 82 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 CCDC107Q8WV48 283 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 PHYHIPQ92561 330 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 Q96M66 194 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 P2RX4Q99571 388 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 SELENOIQ9C0D9 397 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 BANF2Q9H503 90 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 MBNL3Q9NUK0 354 aaKnown RBP8.29□□□□□ -1.08
CPSF1-203ENST00000527916 SCN3BQ9NY72 215 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 TRAPPC2LQ9UL33 140 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 STARD9Q9P2P6 4700 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 A0A1W2PPE3 182 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 C12orf77C9JDV5 145 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 PTGES3LE9PB15 166 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 TXNL1O43396 289 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 IGKV1D-33P01593 117 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 IGKV1-33P01594 117 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 IGHG2P01859 326 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 HES1Q14469 280 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 LY6G6FQ5SQ64 297 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 C1orf100Q5SVJ3 147 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 GLT8D1Q68CQ7 371 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 SIGIRRQ6IA17 410 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 SLC25A48Q6ZT89 311 aaKnown RBP8.28□□□□□ -1.08
CPSF1-203ENST00000527916 MOB3BQ86TA1 216 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 LRRTM1Q86UE6 522 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 Q8N6K4 173 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 ZNF439Q8NDP4 499 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 OR8H1Q8NGG4 311 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 OR2T10Q8NGZ9 312 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 OR4K15Q8NH41 348 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 CHPT1Q8WUD6 406 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 RTN4IP1Q8WWV3 396 aaPredicted RBP8.28□□□□□ -1.08
CPSF1-203ENST00000527916 EAF1Q96JC9 268 aaPredicted RBP8.28□□□□□ -1.08
CPSF1-203ENST00000527916 CST11Q9H112 138 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 ZMAT4Q9H898 229 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 LSM2Q9Y333 95 aaKnown RBP8.28□□□□□ -1.08
CPSF1-203ENST00000527916 LRRC42Q9Y546 428 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 SMAD5-AS1Q9Y6J3 95 aa8.28□□□□□ -1.08
CPSF1-203ENST00000527916 SH2D7A6NKC9 451 aaPredicted RBP8.27□□□□□ -1.09
CPSF1-203ENST00000527916 PDCD6O75340 191 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 CRTAPO75718 401 aaPredicted RBP8.27□□□□□ -1.09
CPSF1-203ENST00000527916 HBZP02008 142 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 RCC1P18754 421 aaPredicted RBP8.27□□□□□ -1.09
CPSF1-203ENST00000527916 SRMP19623 302 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 LUMP51884 338 aaPredicted RBP8.27□□□□□ -1.09
CPSF1-203ENST00000527916 ZNF134P52741 427 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 HTD2P86397 168 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 GABPB1Q06547 395 aaPredicted RBP8.27□□□□□ -1.09
CPSF1-203ENST00000527916 IRF3Q14653 427 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 MORN2Q502X0 79 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 CT45A1Q5HYN5 189 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 ZFAND6Q6FIF0 208 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 ZNF329Q86UD4 541 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 TGIF2LXQ8IUE1 241 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 ZNF695Q8IW36 515 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 COMMD1Q8N668 190 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 OR5M8Q8NGP6 311 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 CT45A3Q8NHU0 189 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 ABCG5Q9H222 651 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 DUSP21Q9H596 190 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 ISYNA1Q9NPH2 558 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 LIN7CQ9NUP9 197 aaKnown RBP8.27□□□□□ -1.09
CPSF1-203ENST00000527916 KCNIP1Q9NZI2 227 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 ZNF256Q9Y2P7 627 aaPredicted RBP8.27□□□□□ -1.09
CPSF1-203ENST00000527916 TPRKBQ9Y3C4 175 aa8.27□□□□□ -1.09
CPSF1-203ENST00000527916 IGHV3-43A0A0B4J1X8 118 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 ANKRD65E5RJM6 399 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 CCL24O00175 119 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 LANCL1O43813 399 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 MOSP00540 346 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 UCHL1P09936 223 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 IGHV3-43DP0DP04 118 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 VHLP40337 213 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 SLC35B1P78383 322 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 TPBGQ13641 420 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 HNF4GQ14541 408 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 MED22Q15528 200 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 CEACAM19Q7Z692 300 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 SLC35E3Q7Z769 313 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 FOXRED2Q8IWF2 684 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 Q8N9W7 124 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 KCNG3Q8TAE7 436 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 NEDD4LQ96PU5 975 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 CITED4Q96RK1 184 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 TM2D1Q9BX74 207 aa8.26□□□□□ -1.09
CPSF1-203ENST00000527916 TAF9BQ9HBM6 251 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms