RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 LIMS3P0CW19 117 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 LIMS4P0CW20 117 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 SCGB1C2P0DMR2 95 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 CCL5P13501 91 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 ZNF14P17017 642 aaPredicted RBP2.42□□□□□ -2.02
CD44-223ENST00000526553 ACOT2P49753 483 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 RAB8AP61006 207 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 SKP1P63208 163 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 ELF3P78545 371 aaPredicted RBP2.42□□□□□ -2.02
CD44-223ENST00000526553 TTMPQ5BVD1 217 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 ZNF678Q5SXM1 525 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 FAM162BQ5T6X4 162 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 GLYATQ6IB77 296 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 MED27Q6P2C8 311 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 SLC25A34Q6PIV7 304 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 PLEKHG7Q6ZR37 379 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 FA2HQ7L5A8 372 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 PRNTQ86SH4 94 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 LINC00596Q86U02 117 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 CD302Q8IX05 232 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 FAM9CQ8IZT9 166 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 MIR7-3HGQ8N6C7 128 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 DYNC2LI1Q8TCX1 351 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 SCGB1C1Q8TD33 95 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 CCL17Q92583 94 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 YIPF5Q969M3 257 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 OPTNQ96CV9 577 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 FMC1Q96HJ9 113 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 DERL3Q96Q80 235 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 MS4A8Q9BY19 250 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 UGT2B28Q9BY64 529 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 SLC25A31Q9H0C2 315 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 RHOFQ9HBH0 211 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 SND1-IT1Q9HBX3 110 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 MARCOQ9UEW3 520 aaPredicted RBP2.42□□□□□ -2.02
CD44-223ENST00000526553 RWDD2AQ9UIY3 292 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 RANBP2P49792 3224 aaKnown RBP2.42□□□□□ -2.02
CD44-223ENST00000526553 FAM183AA6NL82 134 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 CEACAM18A8MTB9 384 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 C9J4A7 227 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 LIN7AO14910 233 aaPredicted RBP2.41□□□□□ -2.02
CD44-223ENST00000526553 IGHV1-46P01743 117 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 AKR1C4P17516 323 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 ATF1P18846 271 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 CELP19835 753 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 SLC6A1P30531 599 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 CBX5P45973 191 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 IDH2P48735 452 aaKnown RBP2.41□□□□□ -2.02
CD44-223ENST00000526553 STC1P52823 247 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 PRDX1Q06830 199 aaKnown RBP2.41□□□□□ -2.02
CD44-223ENST00000526553 COTL1Q14019 142 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 EXOC3L4Q17RC7 722 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 GOLGA7BQ2TAP0 167 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 SP6Q3SY56 376 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 NIPAL1Q6NVV3 410 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 CLEC18BQ6UXF7 455 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 GALNT10Q86SR1 603 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 STK40Q8N2I9 435 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 MNS1Q8NEH6 495 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 RNASEH2CQ8TDP1 164 aaKnown RBP2.41□□□□□ -2.02
CD44-223ENST00000526553 DTD1Q8TEA8 209 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 PGLYRP3Q96LB9 341 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 FAAP24Q9BTP7 215 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 EURLQ9NYK6 297 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 PSMD13Q9UNM6 376 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 C14orf166Q9Y224 244 aaKnown RBP2.41□□□□□ -2.02
CD44-223ENST00000526553 NCOR1O75376 2440 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 RAD50Q92878 1312 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 COL4A1P02462 1669 aa2.41□□□□□ -2.02
CD44-223ENST00000526553 MYH13Q9UKX3 1938 aa2.4□□□□□ -2.02
CD44-223ENST00000526553 DDX60LQ5H9U9 1706 aaKnown RBP2.4□□□□□ -2.02
CD44-223ENST00000526553 TRAV8-3A0A0A6YYJ7 113 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 TRAV8-2A0A0B4J237 113 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 SMLR1H3BR10 107 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 K7EPK0 472 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 ITGB1BP1O14713 200 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 AQP9O43315 295 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 CYTH3O43739 400 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 CXorf1O96002 111 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 CA2P00918 260 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 SOD3P08294 240 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 SEC11BP0C7V7 166 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 PET100P0DJ07 73 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 CD28P10747 220 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 TGM4P49221 684 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 TIMM23BQ5SRD1 257 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 TMEM215Q68D42 235 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 DGAT2L6Q6ZPD8 337 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 C10orf107Q8IVU9 208 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 OSR2Q8N2R0 312 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 SLC25A45Q8N413 288 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 KLF14Q8TD94 323 aaPredicted RBP2.4□□□□□ -2.03
CD44-223ENST00000526553 TNFRSF14Q92956 283 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 WDR34Q96EX3 536 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 ZNF514Q96K75 400 aaPredicted RBP2.4□□□□□ -2.03
CD44-223ENST00000526553 PPP1R36Q96LQ0 422 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 PEBP4Q96S96 227 aa2.4□□□□□ -2.03
CD44-223ENST00000526553 PAIP2Q9BPZ3 127 aaKnown RBP2.4□□□□□ -2.03
CD44-223ENST00000526553 C7orf50Q9BRJ6 194 aaKnown RBP2.4□□□□□ -2.03
CD44-223ENST00000526553 LLPHQ9BRT6 129 aaKnown RBP2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms