RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 RUNX1Q01196 453 aa17.97■□□□□ 0.47
VPS28-205ENST00000526204 ATP1A1-AS1Q5TC04 95 aa17.97■□□□□ 0.47
VPS28-205ENST00000526204 FIP1L1Q6UN15 594 aaKnown RBP17.97■□□□□ 0.47
VPS28-205ENST00000526204 VASH2Q86V25 355 aa17.97■□□□□ 0.47
VPS28-205ENST00000526204 PRR18Q8N4B5 295 aa17.97■□□□□ 0.47
VPS28-205ENST00000526204 COA4Q9NYJ1 87 aa17.97■□□□□ 0.47
VPS28-205ENST00000526204 PPP1R3CQ9UQK1 317 aa17.97■□□□□ 0.47
VPS28-205ENST00000526204 ARHGAP21Q5T5U3 1957 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 CDIPTO14735 213 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 SYNGR2O43760 224 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 IGKV1-39P01597 117 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 IGKV1D-39P04432 117 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 IDH3GP51553 393 aaPredicted RBP17.96■□□□□ 0.47
VPS28-205ENST00000526204 INO80CQ6PI98 192 aaPredicted RBP17.96■□□□□ 0.47
VPS28-205ENST00000526204 MYPOPQ86VE0 399 aaPredicted RBP17.96■□□□□ 0.47
VPS28-205ENST00000526204 CACNG5Q9UF02 275 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 IGHV1-2P23083 117 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 IGFBP7Q16270 282 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 SLC25A24Q6NUK1 477 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 Q6ZRM9 215 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 ZNF295-AS1Q8N0V1 137 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 SLC25A40Q8TBP6 338 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 TMEM9BQ9NQ34 198 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 KCNS2Q9ULS6 477 aa17.96■□□□□ 0.47
VPS28-205ENST00000526204 TRAV39A0A0B4J263 110 aa17.95■□□□□ 0.46
VPS28-205ENST00000526204 RNF212BA8MTL3 300 aa17.95■□□□□ 0.46
VPS28-205ENST00000526204 HSPB1P04792 205 aaKnown RBP17.95■□□□□ 0.46
VPS28-205ENST00000526204 AGAP20933 346 aa17.95■□□□□ 0.46
VPS28-205ENST00000526204 TNFSF10P50591 281 aa17.95■□□□□ 0.46
VPS28-205ENST00000526204 KRBOX4Q5JUW0 171 aa17.95■□□□□ 0.46
VPS28-205ENST00000526204 ISOC2Q96AB3 205 aa17.95■□□□□ 0.46
VPS28-205ENST00000526204 PUS1Q9Y606 427 aaKnown RBP eCLIP17.95■□□□□ 0.46
VPS28-205ENST00000526204 TRAV1-1A0A0B4J248 108 aa17.95■□□□□ 0.46
VPS28-205ENST00000526204 HOXB1P14653 301 aaPredicted RBP17.95■□□□□ 0.46
VPS28-205ENST00000526204 RAB5AP20339 215 aa17.95■□□□□ 0.46
VPS28-205ENST00000526204 CEACAM6P40199 344 aa17.95■□□□□ 0.46
VPS28-205ENST00000526204 ZNF506Q5JVG8 444 aa17.95■□□□□ 0.46
VPS28-205ENST00000526204 CLCF1Q9UBD9 225 aa17.95■□□□□ 0.46
VPS28-205ENST00000526204 R4GN57 208 aa17.95■□□□□ 0.46
VPS28-205ENST00000526204 MED13Q9UHV7 2174 aa17.94■□□□□ 0.46
VPS28-205ENST00000526204 A0A1W2PPH5 198 aa17.94■□□□□ 0.46
VPS28-205ENST00000526204 H3BP45 60 aa17.94■□□□□ 0.46
VPS28-205ENST00000526204 IGKV1-5P01602 117 aa17.94■□□□□ 0.46
VPS28-205ENST00000526204 DAOP14920 347 aa17.94■□□□□ 0.46
VPS28-205ENST00000526204 ZNF585BQ52M93 769 aa17.94■□□□□ 0.46
VPS28-205ENST00000526204 Q6ZT83 130 aa17.94■□□□□ 0.46
VPS28-205ENST00000526204 FAM214BQ7L5A3 538 aa17.94■□□□□ 0.46
VPS28-205ENST00000526204 THNSL2Q86YJ6 484 aa17.94■□□□□ 0.46
VPS28-205ENST00000526204 SCGB1C1Q8TD33 95 aa17.94■□□□□ 0.46
VPS28-205ENST00000526204 C12orf57Q99622 126 aa17.94■□□□□ 0.46
VPS28-205ENST00000526204 KCNIP1Q9NZI2 227 aa17.94■□□□□ 0.46
VPS28-205ENST00000526204 A6NLC8 198 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 S100A6P06703 90 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 SRP19P09132 144 aaKnown RBP17.93■□□□□ 0.46
VPS28-205ENST00000526204 ERVS71-1P61550 626 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 TMEM267Q0VDI3 215 aaPredicted RBP17.93■□□□□ 0.46
VPS28-205ENST00000526204 PSG7Q13046 419 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 MALSU1Q96EH3 234 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 PSENENQ9NZ42 101 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 RNF150Q9ULK6 438 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 WDR1O75083 606 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 LYZL6O75951 148 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 SCAF4O95104 1147 aaKnown RBP17.93■□□□□ 0.46
VPS28-205ENST00000526204 IGHG3P01860 377 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 ZNF806P0C7X5 589 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 MAS1LP35410 378 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 HBG1P69891 147 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 HBG2P69892 147 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 HAGHQ16775 308 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 IZUMO4Q1ZYL8 232 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 TMPRSS7Q7RTY8 843 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 HES4Q9HCC6 221 aa17.93■□□□□ 0.46
VPS28-205ENST00000526204 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.92■□□□□ 0.46
VPS28-205ENST00000526204 HAND1O96004 215 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 GRPP07492 148 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 ZNF16P17020 682 aaPredicted RBP17.92■□□□□ 0.46
VPS28-205ENST00000526204 CD82P27701 267 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 ICAM4Q14773 271 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 EIF2S3LQ2VIR3 472 aaKnown RBP17.92■□□□□ 0.46
VPS28-205ENST00000526204 FAM24BQ8N5W8 94 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 DRAM1Q8N682 238 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 ZBTB34Q8NCN2 500 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 OR14J1Q9UGF5 321 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 GPR179Q6PRD1 2367 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 TMEM30CPA0ZSE6 113 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 FAM90A26D6RGX4 464 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 ARG1P05089 322 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 OR8U8P0C7N1 319 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 SNRPEP62304 92 aaKnown RBP17.92■□□□□ 0.46
VPS28-205ENST00000526204 ALKBH6Q3KRA9 238 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 KHDC3LQ587J8 217 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 CLDND2Q8NHS1 167 aa17.92■□□□□ 0.46
VPS28-205ENST00000526204 PSMG3Q9BT73 122 aaPredicted RBP17.92■□□□□ 0.46
VPS28-205ENST00000526204 C5orf52A6NGY3 159 aa17.91■□□□□ 0.46
VPS28-205ENST00000526204 H3BQ15 152 aa17.91■□□□□ 0.46
VPS28-205ENST00000526204 CBR1P16152 277 aa17.91■□□□□ 0.46
VPS28-205ENST00000526204 GCNT2Q8N0V5 402 aa17.91■□□□□ 0.46
VPS28-205ENST00000526204 KLF14Q8TD94 323 aaPredicted RBP17.91■□□□□ 0.46
VPS28-205ENST00000526204 A0A1W2PPE2 198 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 PCP4L1A6NKN8 68 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms