RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CD8AP01732 235 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 RNF224P0DH78 156 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 PNLIPP16233 465 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 GPR183P32249 361 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 TNFRSF9Q07011 255 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 TMEM30BQ3MIR4 351 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 PRNTQ86SH4 94 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 LILRA3Q8N6C8 439 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 MARS2Q96GW9 593 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 MFRPQ9BY79 579 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 TMEM222Q9H0R3 208 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 SIGLEC1Q9BZZ2 1709 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 TRAV8-7A0A075B6U6 113 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 SOCS1O15524 211 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 C8orf88P0DMB2 117 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 C10orf128Q5T292 105 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 LRRC29Q8WV35 223 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 GEMIN7Q9H840 131 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 CHODLQ9H9P2 273 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 NPDC1Q9NQX5 325 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 MYO18AQ92614 2054 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 A0A1W2PS18 150 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 CDX4O14627 284 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 FGF5P12034 268 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 ZNF32P17041 273 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 C2orf68Q2NKX9 166 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 ACER2Q5QJU3 275 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 CHST5Q9GZS9 411 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 MEGF9Q9H1U4 602 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 RNF122Q9H9V4 155 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 GPR35Q9HC97 309 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 FGF22Q9HCT0 170 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 OR51B2Q9Y5P1 312 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 TRAV30A0A087WSZ9 112 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 IGLV3-25P01717 112 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 GGTLC2Q14390 218 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 PRICKLE4Q2TBC4 344 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 CCDC144NLQ6NUI1 221 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 SLC23A3Q6PIS1 610 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 WNT5BQ9H1J7 359 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 HEXA-AS1Q9H8Q6 139 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 FRRS1LQ9P0K9 344 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 A0A1W2PRS3 328 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 A8MWV9 139 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 VSIG10L2P0DP72 767 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 VSIG8P0DPA2 414 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 CKS1BP61024 79 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 IFITM3Q01628 133 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 VN1R2Q8NFZ6 395 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 OR8B12Q8NGG6 310 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 TIMP4Q99727 224 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 TMEM131LA2VDJ0 1609 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 KLKB1P03952 638 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 ASAH2BP0C7U1 165 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 ADAD2Q8NCV1 583 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 RFESDQ8TAC1 157 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 MRGPRDQ8TDS7 321 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 DMRTA2Q96SC8 542 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 C7orf71A4D174 169 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 RBM11P57052 281 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 TMEM91Q6ZNR0 172 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 WDR31Q8NA23 367 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 OR10J6PQ8NGY7 276 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 NUDT8Q8WV74 236 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 ALKBH3Q96Q83 286 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 SLC6A13Q9NSD5 602 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 IL36BQ9NZH7 164 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 TBC1D29Q9UFV1 150 aa9.82□□□□□ -0.84
LIMCH1-217ENST00000512946 KBTBD11-OT1A0A1B0GTJ5 212 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 MEX3AA1L020 520 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 RBMY1BA6NDE4 496 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 RBMY1EA6NEQ0 496 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 RBMY1DP0C7P1 496 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 FTH1P19P0C7X4 201 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 RBMY1A1P0DJD3 496 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 RBMY1CP0DJD4 496 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 CDAP32320 146 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 GALNSP34059 522 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 INSL4Q14641 139 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 NUMA1Q14980 2115 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 OR1K1Q8NGR3 316 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 ZNF418Q8TF45 676 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 FAM222BQ8WU58 562 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 KCNS1Q96KK3 526 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 GMLQ99445 158 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 SHPRHQ149N8 1683 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 DLEU1O43261 78 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 CA6P23280 308 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 MC5RP33032 325 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 DUSP2Q05923 314 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 OR11G2Q8NGC1 345 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 RAB1CQ92928 201 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 MS4A6AQ9H2W1 248 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 TRAV8-4A0A0B4J246 113 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 UBE2CO00762 179 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 UBE2L6O14933 153 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 SFTPCP11686 197 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 MDKP21741 143 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 TMEM177Q53S58 311 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 YAE1D1Q9NRH1 226 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms