RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 FAM90A18PA6NE21 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A16PA6NEW6 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A20PA6NIJ5 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A8PA6NJQ4 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A7PA6NKC0 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A22PA8MWA6 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 KIAA1324LA8MWY0 1029 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A12PA8MX19 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A5PA8MXJ8 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A23PA8MXZ1 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 SIRPB1O00241 398 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A15PP0C7V4 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A13PP0C7W8 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A14PP0C7W9 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A24PP0C7X0 464 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 TCEAL6Q6IPX3 200 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 Q6ZS49 121 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 APOBEC3DQ96AK3 386 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 ABHD14BQ96IU4 210 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 USF3Q68DE3 2245 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 CEACAM1P13688 526 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 GFRA1P56159 465 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 LPAL2Q16609 132 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 PMS2CLQ68D20 193 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 TIPARPQ7Z3E1 657 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM58AQ8N1B3 248 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 NECAP1Q8NC96 275 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 S100PBPQ96BU1 408 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 RCC1LQ96I51 464 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 RHOVQ96L33 236 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 DMRT1Q9Y5R6 373 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 DUXBA0A1W2PPF3 345 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 DEGS1O15121 323 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 BCL2P10415 239 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 ZFP36L1Q07352 338 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 OR10V1Q8NGI7 309 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 OR5A2Q8NGI9 324 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 THOC3Q96J01 351 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 OR4C12Q96R67 309 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 RAB40CQ96S21 281 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 PLA2G3Q9NZ20 509 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 RNF150Q9ULK6 438 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 PRR14LQ5THK1 2151 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 A0A1B0GU03 582 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 SEC14L6B5MCN3 397 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 IGKV1-5P01602 117 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 PLP2Q04941 152 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 TESK1Q15569 626 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 HAPLN4Q86UW8 402 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 SNX22Q96L94 193 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 CABLES2Q9BTV7 478 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 PRO1933Q9H354 126 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 C12orf49Q9H741 205 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 GTF3C1Q12789 2109 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 ANKRD30BLA7E2S9 258 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 CLDN34H7C241 214 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 TUBG1P23258 451 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 WDR25Q64LD2 544 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 H1FOOQ8IZA3 346 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 SIRT7Q9NRC8 400 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 TREM2Q9NZC2 230 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 OR14J1Q9UGF5 321 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 TRAPPC2LQ9UL33 140 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 ZNF729A6NN14 1252 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 NTN3O00634 580 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 SELEP16581 610 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM53AQ6NSI3 398 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 ZNF525Q8N782 197 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 CD55P08174 381 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 ZXDAP98168 799 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 GAMTQ14353 236 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 OR8G1Q15617 311 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 ADIRFQ15847 76 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 LINC00696Q6ZRV3 163 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 C1orf87Q8N0U7 546 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 HIST3H2BBQ8N257 126 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 CA5BP1Q8WTZ4 195 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 LHX4Q969G2 390 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 RPUSD4Q96CM3 377 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 POM121L2Q96KW2 1035 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 RBKSQ9H477 322 aa7.86□□□□□ -1.15
LIMCH1-215ENST00000512632 MED12LQ86YW9 2145 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 PDGFBP01127 241 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 MAGEA5P43359 124 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 DEFA6Q01524 100 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 IL22RA2Q969J5 263 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 MUC3AQ02505 3323 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 UBE2L5PA0A1B0GUS4 154 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 MAP1LC3B2A6NCE7 125 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 CXorf65A6NEN9 183 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 SYNGR4O95473 234 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 MDH2P40926 338 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 GNG3P63215 75 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 SAXO1Q8IYX7 474 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 CT55Q8WUE5 264 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 OR5P3Q8WZ94 311 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 APH1AQ96BI3 265 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 MAP1LC3BQ9GZQ8 125 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 SLC39A9Q9NUM3 307 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 BOKQ9UMX3 212 aaPredicted RBP7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms