RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-215	ENST00000496447	CSRP2	Q16527	193 aa		11.44	□□□□□ -0.58
PTPRF-215	ENST00000496447	ZNF519	Q8TB69	540 aa		11.44	□□□□□ -0.58
PTPRF-215	ENST00000496447	ANAPC16	Q96DE5	110 aa		11.44	□□□□□ -0.58
PTPRF-215	ENST00000496447	GSN-AS1	Q9NRJ2	163 aa		11.44	□□□□□ -0.58
PTPRF-215	ENST00000496447	WFDC3	Q8IUB2	231 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	SHISA5	Q8N114	240 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	ZNF738	Q8NE65	137 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	RAB24	Q969Q5	203 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	TMEM167B	Q9NRX6	74 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	METTL1	Q9UBP6	276 aa	Known RBP	11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	PRSS50	Q9UI38	385 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	UFC1	Q9Y3C8	167 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	SCN4A	P35499	1836 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	CLDN14	O95500	239 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	FGF8	P55075	233 aa	Predicted RBP	11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	LSM11	P83369	360 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	MGAT2	Q10469	447 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	CDCP2	Q5VXM1	449 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	ZBTB34	Q8NCN2	500 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	GSX1	Q9H4S2	264 aa	Predicted RBP	11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	PRR13	Q9NZ81	148 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	NAT8	Q9UHE5	227 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	ADAP1	O75689	374 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	G6PC	P35575	357 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	CLEC18B	Q6UXF7	455 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	FAM181A	Q8N9Y4	354 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	OR1L8	Q8NGR8	309 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	ADAT3	Q96EY9	351 aa	Predicted RBP	11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	PIMREG	Q9BSJ6	248 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	SMDT1	Q9H4I9	107 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	CRH	P06850	196 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	ERG	P11308	486 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	COX6A1	P12074	109 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	HLA-G	P17693	338 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	VDAC1	P21796	283 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	DLK1	P80370	383 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	KLRB1	Q12918	225 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	RSPO4	Q2I0M5	234 aa	Predicted RBP	11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	DGAT2L7P	Q6IED9	249 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	OR2T10	Q8NGZ9	312 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	NAT8B	Q9UHF3	227 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	MED19	A0JLT2	244 aa	Predicted RBP	11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	HTR1D	P28221	377 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	PPP1CC	P36873	323 aa	Known RBP	11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	RPL30	P62888	115 aa	Known RBP	11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	FAM219A	Q8IW50	185 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447	VSIG4	Q9Y279	399 aa		11.43	□□□□□ -0.58
PTPRF-215	ENST00000496447		K7N7A8	449 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	CHST1	O43916	411 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	DXO	O77932	396 aa	Known RBP	11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	PPP1R3E	Q9H7J1	279 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	HILPDA	Q9Y5L2	63 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	CASP8AP2	Q9UKL3	1982 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	WDR73	Q6P4I2	378 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	ZPLD1	Q8TCW7	415 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	TEX50	A0A1B0GTY4	177 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	RNASEK	Q6P5S7	137 aa	Known RBP	11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	ITLN1	Q8WWA0	313 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	MRGPRF	Q96AM1	343 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	P2RX4	Q99571	388 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	FOXJ2	Q9P0K8	574 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	TNFSF18	Q9UNG2	199 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	TRAV8-7	A0A075B6U6	113 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	ASAH2B	P0C7U1	165 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	VSIG8	P0DPA2	414 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	NHLRC3	Q5JS37	347 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	LDLRAD3	Q86YD5	345 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	C9orf172	C9J069	976 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	CD99	P14209	185 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	P2RY1	P47900	373 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	CEACAM21	Q3KPI0	293 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	LEMD1	Q68G75	181 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	C10orf111	Q8N326	155 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	SSMEM1	Q8WWF3	244 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	RNF115	Q9Y4L5	304 aa		11.42	□□□□□ -0.58
PTPRF-215	ENST00000496447	CDX1	P47902	265 aa	Predicted RBP	11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	RBM11	P57052	281 aa	Known RBP	11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	SPCS3	P61009	180 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	RPEL1	Q2QD12	228 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	SLC25A42	Q86VD7	318 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	OR4X1	Q8NH49	305 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	MGST3	O14880	152 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	RAB29	O14966	203 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	NEURL1	O76050	574 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	TMEM33	P57088	247 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	RPL24	P83731	157 aa	Known RBP	11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	ID1	P41134	155 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	LOXL3	P58215	753 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	PRSS3P2	Q8NHM4	247 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	LOC101059948	A0A1B0GTJ6	334 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	ATP5J2	P56134	94 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	SLC35B1	P78383	322 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	PSG5	Q15238	335 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	FAM78B	Q5VT40	261 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	C10orf113	Q5VZT2	155 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	OR5AU1	Q8NGC0	362 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	ZDHHC8	Q9ULC8	765 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	SCN3A	Q9NY46	2000 aa		11.41	□□□□□ -0.58
PTPRF-215	ENST00000496447	OR2T8	A6NH00	312 aa		11.4	□□□□□ -0.58
PTPRF-215	ENST00000496447	TPRX1	Q8N7U7	411 aa		11.4	□□□□□ -0.58

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