RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PPYP01298 95 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 ZNF17P17021 662 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 SMIM21Q3B7S5 101 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 FAM27BQ5VT28 67 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 TMEM252Q8N6L7 170 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 NKX6-3A6NJ46 265 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 H0YIZ8 118 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 FCN1O00602 326 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 HSBP1O75506 76 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 SP1P08047 785 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 OR10J1P30954 320 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 ZNF816Q0VGE8 651 aaPredicted RBP14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 BIVMQ86UB2 503 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 GALMQ96C23 342 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 DAZAP1Q96EP5 407 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 NEIL1Q96FI4 390 aaPredicted RBP14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 ZNF665Q9H7R5 613 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 CLCF1Q9UBD9 225 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 CYB5R3P00387 301 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 SLC35E3Q7Z769 313 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 OR10V1Q8NGI7 309 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 NAT8BQ9UHF3 227 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 PRR32B1ATL7 298 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 AMTP48728 403 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 ERVFC1-1P60608 527 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 SPCS3P61009 180 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 GFRALQ6UXV0 394 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 TMEM251Q8N6I4 163 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 OR1P1Q8NH06 330 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 E9PQ18 207 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 CRISP2P16562 243 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 PSG4Q00888 419 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 Q6ZN92 141 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 MRGPRGQ86SM5 289 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 CLDN23Q96B33 292 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 LYRM2Q9NU23 88 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 TRAV39A0A0B4J263 110 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 DNPH1O43598 174 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 HSPB1P04792 205 aaKnown RBP14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 CFHR1Q03591 330 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 OR10AD1Q8NGE0 317 aa14.14□□□□□ -0.15
CCDC88B-209ENST00000494080 BCL2P10415 239 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 PAX5Q02548 391 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 RSPO4Q2I0M5 234 aaPredicted RBP14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 SLC25A47Q6Q0C1 308 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 C16orf82Q7Z2V1 217 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 OR10G4Q8NGN3 311 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 OR10G9Q8NGN4 311 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 OR10G7Q8NGN6 311 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 ARL2-SNX15V9GYD0 113 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 GBF1Q92538 1859 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 DEFB108AA8MXU0 73 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 IGHV3-13P01766 116 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 IGHV3-7P01780 117 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 CDCP2Q5VXM1 449 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 MYPOPQ86VE0 399 aaPredicted RBP14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 KCNIP2Q9NS61 270 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 CDIPTO14735 213 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 CRYABP02511 175 aaKnown RBP14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 GAPTQ8N292 157 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 VN1R17PQ8TDU5 208 aa14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 MSI2Q96DH6 328 aaKnown RBP14.13□□□□□ -0.15
CCDC88B-209ENST00000494080 IGKV1D-43A0A0B4J1Z2 117 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 WFIKKN1Q96NZ8 548 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 TINAGQ9UJW2 476 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 NKX2-8O15522 239 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 SYNGR2O43760 224 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 ATP1A1-AS1Q5TC04 95 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 SMIM15Q7Z3B0 74 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 LNP1A1A4G5 178 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 GCGP01275 180 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 CEACAM6P40199 344 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 LOC102724200A0A096LPH7 203 aaPredicted RBP14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 A0A1W2PPE3 182 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 GPX4P36969 197 aaPredicted RBP14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 LINC00114Q6XXX2 140 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 ZNF596Q8TC21 504 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 MRPL30Q8TCC3 161 aaKnown RBP14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 RAB24Q969Q5 203 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 PCGF1Q9BSM1 259 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 RSG1Q9BU20 258 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 TUBA4BQ9H853 241 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 STARD10Q9Y365 291 aa14.12□□□□□ -0.15
CCDC88B-209ENST00000494080 F8VVB4 439 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 F8VWA3 439 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 AGFG2O95081 481 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 CYC1P08574 325 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 HIST1H1BP16401 226 aaKnown RBP14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 SOX7Q9BT81 388 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 COL6A6A6NMZ7 2263 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 ADCYAP1P18509 176 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 UNC119Q13432 240 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 FDX2Q6P4F2 183 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 OR52M1Q8NGK5 317 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 TAAR3PQ9P1P4 343 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 TMEM30CPA0ZSE6 113 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 OR5B21A6NL26 309 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 PITX3O75364 302 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 SP9P0CG40 484 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 GLIPR1P48060 266 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms