RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 RPEQ96AT9 228 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 RAB18Q9NP72 206 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 JPT1Q9UK76 154 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 MGAT4AQ9UM21 535 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 TCF19Q9Y242 345 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 ETV7Q9Y603 341 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 COL6A5A8TX70 2615 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 POM121CA8CG34 1229 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 MFNGO00587 321 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 TMEM127O75204 238 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 CD3GP09693 182 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 HIST1H1DP16402 221 aaKnown RBP13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 GNB3P16520 340 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 HLA-DRB3P79483 266 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 MRPS15P82914 257 aaKnown RBP13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 HTD2P86397 168 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 RELBQ01201 579 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 C5orf24Q7Z6I8 188 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 CROCCP3Q8IVE0 287 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 OR4F5Q8NH21 305 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 GALMQ96C23 342 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 OR2S2Q9NQN1 319 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 PITPNC1Q9UKF7 332 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 KCNK7Q9Y2U2 307 aa13.11□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 A0A075B6Q4 140 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 A6NDX4 124 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 SERPINE3A8MV23 424 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 SCGNO76038 276 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 IL3RAP26951 378 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 BRS3P32247 399 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 RPS19P39019 145 aaKnown RBP13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 MNDAP41218 407 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 ALDH3B2P48448 385 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 NCS1P62166 190 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 GNMTQ14749 295 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 ARL6IP1Q15041 203 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 SLC25A48Q6ZT89 311 aaKnown RBP13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 ZNF439Q8NDP4 499 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 OR52L2PQ8NGH6 319 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 OR5H6Q8NGV6 325 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 IL1F10Q8WWZ1 152 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 OCSTAMPQ9BR26 566 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 Q9N2K0 584 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 RHBDL2Q9NX52 303 aa13.1□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 SLC31A2O15432 143 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 CHST1O43916 411 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 RGS11O94810 467 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 TFAP2AP05549 437 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 MDKP21741 143 aaPredicted RBP13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 PPP1CCP36873 323 aaKnown RBP13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 SERPINB10P48595 397 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 RAB7AP51149 207 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 VBP1P61758 197 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 MORN2Q502X0 79 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 STEAP3Q658P3 488 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 CCBE1Q6UXH8 406 aaPredicted RBP13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 Q6ZSV7 163 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 GPR141Q7Z602 305 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 ANKRD13BQ86YJ7 626 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 SLC25A38Q96DW6 304 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 BEX1Q9HBH7 125 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 SPATA2Q9UM82 520 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 MMP24Q9Y5R2 645 aa13.09□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 A0A1B0GUS0 222 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 A0A1W2PPI3 338 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 HSD17B6O14756 317 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 YPEL1O60688 119 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 GABARAPO95166 117 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 FCGR3AP08637 254 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 ZNF816Q0VGE8 651 aaPredicted RBP13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 DIAPH2-AS1Q14236 149 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 CT45A1Q5HYN5 189 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 GPR107Q5VW38 600 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 TMEM219Q86XT9 240 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 OR8H3Q8N146 312 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 C3orf56Q8N813 242 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 CT45A3Q8NHU0 189 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 YPEL2Q96QA6 119 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 ABHD14AQ9BUJ0 271 aa13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 NAA50Q9GZZ1 169 aaKnown RBP13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.08□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 TIMM23O14925 209 aa13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 TSPAN9O75954 239 aa13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 GAPDHP04406 335 aaKnown RBP13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 CD24P25063 80 aa13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 ZNF134P52741 427 aa13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 ARFRP1Q13795 201 aa13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 CDNFQ49AH0 187 aa13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 LY6G6FQ5SQ64 297 aa13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 SLC25A46Q96AG3 418 aa13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 PHF21AQ96BD5 680 aa13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 NPFFR1Q9GZQ6 430 aa13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 C16orf95Q9H693 158 aa13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 RANBP3Q9H6Z4 567 aaPredicted RBP13.07□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 CLPSL1A2RUU4 121 aa13.06□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 TRDCB7Z8K6 153 aa13.06□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 LPLP06858 475 aa13.06□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 GSTP1P09211 210 aaKnown RBP13.06□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 SCTP09683 121 aa13.06□□□□□ -0.32
MSH5-SAPCD1-206ENST00000491552 TALDO1P37837 337 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms