RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 PLXNA3P51805 1871 aa1□□□□□ -2.25
CPSF3-205ENST00000489629 CEP170Q5SW79 1584 aa1□□□□□ -2.25
CPSF3-205ENST00000489629 C1orf232A0A0U1RR37 186 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 TINCRA0A1B0GVN0 87 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 GOLGA6L10A6NI86 522 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 METTL15A6NJ78 407 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 E7EQL1 145 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 F5H5K5 113 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 SLC31A1O15431 190 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 SYNGR2O43760 224 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 UGT2B11O75310 529 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 SOX14O95416 240 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 PET100P0DJ07 73 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 AKR1C4P17516 323 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 CBX5P45973 191 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 INPP1P49441 399 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 SULT1A2P50226 295 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 LINC00313P59037 77 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 BSPH1Q075Z2 132 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 SMAGPQ0VAQ4 97 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 MMDQ15546 238 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 BCL2A1Q16548 175 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 TBC1D28Q2M2D7 210 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 Q6ZRU5 148 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 LYZL2Q7Z4W2 148 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 TMEM156Q8N614 296 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 ATP6V1C2Q8NEY4 427 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 CASTOR1Q8WTX7 329 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 TAMM41Q96BW9 452 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 CMBLQ96DG6 245 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 SLC25A44Q96H78 314 aaPredicted RBP0.99□□□□□ -2.25
CPSF3-205ENST00000489629 RBP7Q96R05 134 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 ZNF426Q9BUY5 554 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 ARL6Q9H0F7 186 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 KCNIP2Q9NS61 270 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 SLC23A2Q9UGH3 650 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 RPUSD1Q9UJJ7 312 aaKnown RBP0.99□□□□□ -2.25
CPSF3-205ENST00000489629 MCTS1Q9ULC4 181 aaKnown RBP0.99□□□□□ -2.25
CPSF3-205ENST00000489629 TP53TG1Q9Y2A0 90 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 PHLDA3Q9Y5J5 127 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 ATP6V1DQ9Y5K8 247 aa0.99□□□□□ -2.25
CPSF3-205ENST00000489629 ADAMTSL1Q8N6G6 1762 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 ARHGAP32A7KAX9 2087 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 BRD4O60885 1362 aaPredicted RBP0.98□□□□□ -2.25
CPSF3-205ENST00000489629 IGHV3OR15-7A0A075B7D8 119 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 A0A1W2PNM2 257 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 ARGFXA6NJG6 315 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 F5H5T6 163 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 F5H768 121 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 PHYHO14832 338 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 AZIN1O14977 448 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 PSCAO43653 123 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 YEATS4O95619 227 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 GPR75O95800 540 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 CTSEP14091 401 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 UGT2B7P16662 529 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 ZNF22P17026 224 aaPredicted RBP0.98□□□□□ -2.25
CPSF3-205ENST00000489629 ATF1P18846 271 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 CXCL3P19876 107 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 FUSP35637 526 aaKnown RBP eCLIP0.98□□□□□ -2.25
CPSF3-205ENST00000489629 HSPA13P48723 471 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 GZMMP51124 257 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 MAP3K7CLP57077 242 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 GTF2BQ00403 316 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 C1DQ13901 141 aaKnown RBP0.98□□□□□ -2.25
CPSF3-205ENST00000489629 COTL1Q14019 142 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 HLA-DRB5Q30154 266 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 ZCWPW2Q504Y3 356 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 TRMT12Q53H54 448 aaKnown RBP0.98□□□□□ -2.25
CPSF3-205ENST00000489629 C10orf91Q5T1B1 145 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 SDHAF4Q5VUM1 108 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 SPATA24Q86W54 205 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 ZFAND2AQ8N6M9 145 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 STOML3Q8TAV4 291 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 OR5P3Q8WZ94 311 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 HIGD2AQ9BW72 106 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 GNB1LQ9BYB4 327 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 MS4A6AQ9H2W1 248 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 C16orf95Q9H693 158 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 PLEKHJ1Q9NW61 149 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 COMMD9Q9P000 198 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 NOSIPQ9Y314 301 aaKnown RBP0.98□□□□□ -2.25
CPSF3-205ENST00000489629 SAMHD1Q9Y3Z3 626 aaKnown RBP0.98□□□□□ -2.25
CPSF3-205ENST00000489629 MTCH2Q9Y6C9 303 aa0.98□□□□□ -2.25
CPSF3-205ENST00000489629 MYO9BQ13459 2157 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 TRBV24-1A0A075B6N3 115 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 DAPL1A0PJW8 107 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 SDHAF1A6NFY7 115 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 GOLGA8KD6RF30 607 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 GOLGA8MH3BSY2 632 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 J3QKU1 62 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 BIRC5O15392 142 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 SH2D1AO60880 128 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 ARL6IP5O75915 188 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 CDS2O95674 445 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 OPN1SWP03999 348 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 ATP5G1P05496 136 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 TPM3P06753 285 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 CTSGP08311 255 aa0.97□□□□□ -2.25
CPSF3-205ENST00000489629 OCMP0CE72 109 aaPredicted RBP0.97□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms