RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SPACA1Q9HBV2 294 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 Q9N2K0 584 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 MMP26Q9NRE1 261 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 DECR2Q9NUI1 292 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 NECAP2Q9NVZ3 263 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 C14orf166Q9Y224 244 aaKnown RBP10.24□□□□□ -0.77
HDAC6-230ENST00000488543 PRELID3BQ9Y3B1 194 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 IFNA2P01563 188 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 IGHV3-13P01766 116 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 GLAP06280 429 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 FCGR2CP31995 323 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 FHITP49789 147 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 PJVKQ0ZLH3 352 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 IL15RAQ13261 267 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 SRSF7Q16629 238 aaKnown RBP eCLIP10.24□□□□□ -0.77
HDAC6-230ENST00000488543 FBXL19-AS1Q494R0 122 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 C4orf17Q53FE4 359 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 GGNBP1Q5YKI7 109 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 ADAM5Q6NVV9 412 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 DHRS11Q6UWP2 260 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 TMEM108Q6UXF1 575 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 LINC00518Q8N0U6 118 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 OR11L1Q8NGX0 322 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 SYT3Q9BQG1 590 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 USP9XQ93008 2570 aaPredicted RBP10.23□□□□□ -0.77
HDAC6-230ENST00000488543 UTP20O75691 2785 aaKnown RBP10.23□□□□□ -0.77
HDAC6-230ENST00000488543 H7C2Y5 167 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 NDUFA2O43678 99 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 C1QL1O75973 258 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 SFTA3P0C7M3 94 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 RPL12P30050 165 aaKnown RBP10.23□□□□□ -0.77
HDAC6-230ENST00000488543 HOXA4Q00056 320 aaPredicted RBP10.23□□□□□ -0.77
HDAC6-230ENST00000488543 TFF3Q07654 80 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 ZNF146Q15072 292 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 SURF2Q15527 256 aaPredicted RBP10.23□□□□□ -0.77
HDAC6-230ENST00000488543 ZNF843Q8N446 348 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 MRPL30Q8TCC3 161 aaKnown RBP10.23□□□□□ -0.77
HDAC6-230ENST00000488543 RDH5Q92781 318 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 SCGB3A2Q96PL1 93 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 USB1Q9BQ65 265 aaKnown RBP10.23□□□□□ -0.77
HDAC6-230ENST00000488543 IGLV3-9A0A075B6K5 115 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 TRBV6-6A0A0A6YYG2 114 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 SLC33A1O00400 549 aaPredicted RBP10.23□□□□□ -0.77
HDAC6-230ENST00000488543 HS3ST1O14792 307 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 DEGS1O15121 323 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 NXPH2O95156 264 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 LYL1P12980 280 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 KCNJ3P48549 501 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 WDR82Q6UXN9 313 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 C20orf204Q6ZNR8 217 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 Q6ZRG5 221 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 RXFP4Q8TDU9 374 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 NEUROG1Q92886 237 aa10.23□□□□□ -0.77
HDAC6-230ENST00000488543 ESRP2Q9H6T0 727 aaKnown RBP10.23□□□□□ -0.77
HDAC6-230ENST00000488543 KIAA2026Q5HYC2 2103 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 WNT9BO14905 357 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 OR2H2O95918 312 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 PTAFRP25105 342 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 CD200P41217 278 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 PIGPP57054 158 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 TMEM33P57088 247 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 ZNF880Q6PDB4 577 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 LYZL2Q7Z4W2 148 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 OR10Z1Q8NGY1 313 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 NEK7Q8TDX7 302 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 SECTM1Q8WVN6 248 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 ITLN2Q8WWU7 325 aaPredicted RBP10.22□□□□□ -0.77
HDAC6-230ENST00000488543 HRNRQ86YZ3 2850 aaPredicted RBP10.22□□□□□ -0.77
HDAC6-230ENST00000488543 K7EPK0 472 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 SIRPB1O00241 398 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 SIAH2O43255 324 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 PTBP3O95758 552 aaKnown RBP10.22□□□□□ -0.77
HDAC6-230ENST00000488543 OR5AC1P0C628 307 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 SPP1P10451 314 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 ZNF44P15621 663 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 KLF3P57682 345 aaPredicted RBP10.22□□□□□ -0.77
HDAC6-230ENST00000488543 FLI1Q01543 452 aaPredicted RBP10.22□□□□□ -0.77
HDAC6-230ENST00000488543 SPRNQ5BIV9 151 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 IGSF11Q5DX21 431 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 FAM71E2Q8N5Q1 922 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 PLPPR2Q96GM1 343 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 AKR1E2Q96JD6 320 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 C20orf24Q9BUV8 137 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 MRPL37Q9BZE1 423 aaKnown RBP10.22□□□□□ -0.77
HDAC6-230ENST00000488543 SH3BGRL3Q9H299 93 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 UFSP2Q9NUQ7 469 aa10.22□□□□□ -0.77
HDAC6-230ENST00000488543 CARHSP1Q9Y2V2 147 aaKnown RBP10.22□□□□□ -0.77
HDAC6-230ENST00000488543 A6NLC8 198 aa10.21□□□□□ -0.77
HDAC6-230ENST00000488543 RNASEK-C17orf49H0YIS7 233 aa10.21□□□□□ -0.77
HDAC6-230ENST00000488543 PLAUP00749 431 aa10.21□□□□□ -0.77
HDAC6-230ENST00000488543 CRYBA1P05813 215 aa10.21□□□□□ -0.77
HDAC6-230ENST00000488543 CTSDP07339 412 aaPredicted RBP10.21□□□□□ -0.77
HDAC6-230ENST00000488543 SCTP09683 121 aa10.21□□□□□ -0.77
HDAC6-230ENST00000488543 DAOP14920 347 aa10.21□□□□□ -0.77
HDAC6-230ENST00000488543 ECI1P42126 302 aa10.21□□□□□ -0.77
HDAC6-230ENST00000488543 HERPUD1Q15011 391 aa10.21□□□□□ -0.77
HDAC6-230ENST00000488543 SPIN3Q5JUX0 258 aa10.21□□□□□ -0.77
HDAC6-230ENST00000488543 C10orf91Q5T1B1 145 aa10.21□□□□□ -0.77
HDAC6-230ENST00000488543 OR2Z1Q8NG97 314 aa10.21□□□□□ -0.77
HDAC6-230ENST00000488543 PLPPR1Q8TBJ4 325 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms