RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SECTM1Q8WVN6 248 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 IL1F10Q8WWZ1 152 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 LURAP1Q96LR2 239 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 SLC5A7Q9GZV3 580 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 NCOR1P1Q9H4R4 102 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 DCAF16Q9NXF7 216 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 PRR13Q9NZ81 148 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 KCNIP3Q9Y2W7 256 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 MAB21L2Q9Y586 359 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 OVOL3O00110 214 aa11.8□□□□□ -0.52
CUX1-209ENST00000487284 GPR31O00270 319 aa11.8□□□□□ -0.52
CUX1-209ENST00000487284 NDUFS7O75251 213 aa11.8□□□□□ -0.52
CUX1-209ENST00000487284 LY6HO94772 140 aa11.8□□□□□ -0.52
CUX1-209ENST00000487284 IFITM2Q01629 132 aa11.8□□□□□ -0.52
CUX1-209ENST00000487284 OR13A1Q8NGR1 328 aa11.8□□□□□ -0.52
CUX1-209ENST00000487284 GRPEL2Q8TAA5 225 aa11.8□□□□□ -0.52
CUX1-209ENST00000487284 CCL19Q99731 98 aa11.8□□□□□ -0.52
CUX1-209ENST00000487284 SUCNR1Q9BXA5 334 aa11.8□□□□□ -0.52
CUX1-209ENST00000487284 HSPB11Q9Y547 144 aa11.8□□□□□ -0.52
CUX1-209ENST00000487284 ANKRD17O75179 2603 aaKnown RBP11.8□□□□□ -0.52
CUX1-209ENST00000487284 ODAMA1E959 279 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 LYNX1G3V0Z9 82 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 HBZP02008 142 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 LYNX1P0DP58 116 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 TMEM187Q14656 261 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 CR1LQ2VPA4 569 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 GSG1LQ6UXU4 331 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 ZNF788Q6ZQV5 615 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 ZNF818PQ6ZRF7 136 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 C1orf87Q8N0U7 546 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 PRR18Q8N4B5 295 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 LRTM2Q8N967 370 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 ZNRF1Q8ND25 227 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 OR5D13Q8NGL4 314 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 OR1L1Q8NH94 360 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 MRGPRDQ8TDS7 321 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 GALMQ96C23 342 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 GAFA1Q96PS6 74 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 PDCD10Q9BUL8 212 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 TOLLIPQ9H0E2 274 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 FAM234AQ9H0X4 552 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 DNTTIP1Q9H147 329 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 ZNF665Q9H7R5 613 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 CCL28Q9NRJ3 127 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 CSMD2Q7Z408 3487 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 IGHV1-69-2A0A0G2JMI3 117 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 TMEM178BH3BS89 294 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 LGALS8O00214 317 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 MPPED1O15442 326 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 HSPA12AO43301 675 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 ADAP1O75689 374 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 OR5AC1P0C628 307 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 P2RX3P56373 397 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 EDDM3AQ14507 147 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 TPRX1Q8N7U7 411 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 OR10V1Q8NGI7 309 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 UBALD1Q8TB05 177 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 NEU4Q8WWR8 484 aaPredicted RBP11.79□□□□□ -0.52
CUX1-209ENST00000487284 CCL17Q92583 94 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 TMEM246Q9BRR3 403 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 RDH8Q9NYR8 311 aa11.79□□□□□ -0.52
CUX1-209ENST00000487284 TRAV14DV4A0A0A6YYC5 116 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 C5orf51A6NDU8 294 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 HMSDA8MTL9 139 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 FAM25EA8MYX2 175 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 C15orf65H3BRN8 121 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 RGS13O14921 159 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 WNT2P09544 360 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 COL8A2P25067 703 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 IL2RGP31785 369 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 LUMP51884 338 aaPredicted RBP11.78□□□□□ -0.52
CUX1-209ENST00000487284 FGL1Q08830 312 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 LGALSLQ3ZCW2 172 aaPredicted RBP11.78□□□□□ -0.52
CUX1-209ENST00000487284 LIAT1Q6ZQX7 453 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 BVESQ8NE79 360 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 DEFB108BQ8NET1 73 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 GLYATL2Q8WU03 294 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 SEC22AQ96IW7 307 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 NMES1Q9C002 83 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 TMEM106BQ9NUM4 274 aa11.78□□□□□ -0.52
CUX1-209ENST00000487284 ARID1AO14497 2285 aa11.77□□□□□ -0.52
CUX1-209ENST00000487284 TRAV38-1A0A0B4J264 116 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 C3orf85A0A1B0GTC6 90 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 HSD17B6O14756 317 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 SIGLEC5O15389 551 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 SNAPC5O75971 98 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 GYPAP02724 150 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 SELLP14151 372 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 GZMHP20718 246 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 SSTR5P35346 364 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 CYCSP99999 105 aaKnown RBP11.77□□□□□ -0.53
CUX1-209ENST00000487284 SP6Q3SY56 376 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 TBC1D26Q86UD7 250 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 CMTM1Q8IZ96 169 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 MSI2Q96DH6 328 aaKnown RBP11.77□□□□□ -0.53
CUX1-209ENST00000487284 TP53RKQ96S44 253 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 CCL13Q99616 98 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 DCTN5Q9BTE1 182 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 GON7Q9BXV9 100 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 PARP12Q9H0J9 701 aaKnown RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms