RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 ZNF638Q14966 1978 aaKnown RBP14.3□□□□□ -0.12
COL7A1-210ENST00000487017 A0A0J9YW62 118 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 TEX30Q5JUR7 227 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 FBXW9Q5XUX1 488 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 INO80CQ6PI98 192 aaPredicted RBP14.3□□□□□ -0.12
COL7A1-210ENST00000487017 TEPPQ6URK8 271 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 NPDC1Q9NQX5 325 aaPredicted RBP14.3□□□□□ -0.12
COL7A1-210ENST00000487017 TRIP6Q15654 476 aaKnown RBP14.3□□□□□ -0.12
COL7A1-210ENST00000487017 C16orf82Q7Z2V1 217 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 CYB561D1Q8N8Q1 229 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 ANKRD31Q8N7Z5 1873 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 SYNGR1O43759 233 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 PSG4Q00888 419 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 AESQ08117 197 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 AP5S1Q9NUS5 200 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 CLN8Q9UBY8 286 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 M0QZK8 103 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 GGCTO75223 188 aaKnown RBP14.29□□□□□ -0.12
COL7A1-210ENST00000487017 P01737 135 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 IL9P15248 144 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 RUNX1Q01196 453 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 FHL5Q5TD97 284 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 MDP1Q86V88 176 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 R4GN57 208 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 TDRD15B5MCY1 1934 aaKnown RBP14.29□□□□□ -0.12
COL7A1-210ENST00000487017 COL11A1P12107 1806 aaPredicted RBP14.29□□□□□ -0.12
COL7A1-210ENST00000487017 NPY1RP25929 384 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 P2RY4P51582 365 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 HIST3H3Q16695 136 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 MRPL54Q6P161 138 aaKnown RBP14.29□□□□□ -0.12
COL7A1-210ENST00000487017 TMEM116Q8NCL8 245 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 ZNF665Q9H7R5 613 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 IGSF23A1L1A6 192 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 H0Y980 276 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 CEACAM21Q3KPI0 293 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 SLC25A47Q6Q0C1 308 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 SMRP1Q8NCR6 262 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 ZNF488Q96MN9 340 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 HSF4Q9ULV5 492 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 PTPRFP10586 1907 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 LRRC37AA6NMS7 1700 aa14.29□□□□□ -0.12
COL7A1-210ENST00000487017 HKR1P10072 659 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 C10orf113Q5VZT2 155 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 TMEM252Q8N6L7 170 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 PIPOXQ9P0Z9 390 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 SHANK3Q9BYB0 1731 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 LMX1BO60663 402 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 SLC35E4Q6ICL7 350 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 TMEM222Q9H0R3 208 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 C5orf52A6NGY3 159 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 IER3P46695 156 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 FOXL2P58012 376 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 FGF12P61328 243 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 GABRA6Q16445 453 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 FDX2Q6P4F2 183 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 C5orf17Q8NAS9 161 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 NFAM1Q8NET5 270 aaPredicted RBP14.28□□□□□ -0.12
COL7A1-210ENST00000487017 OR52L2PQ8NGH6 319 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 RGPD3A6NKT7 1758 aaPredicted RBP14.28□□□□□ -0.12
COL7A1-210ENST00000487017 SNURFLB1AK76 121 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 APELAP0DMC3 54 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 H2BFSP57053 126 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 RBBP6Q7Z6E9 1792 aaKnown RBP14.28□□□□□ -0.12
COL7A1-210ENST00000487017 SMIM10L1P0DMW3 83 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 ACP1P24666 158 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 PPOXP50336 477 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 FLYWCH2Q96CP2 140 aaKnown RBP14.28□□□□□ -0.12
COL7A1-210ENST00000487017 SMIM10Q96HG1 83 aa14.28□□□□□ -0.12
COL7A1-210ENST00000487017 BRWD1Q9NSI6 2320 aa14.27□□□□□ -0.12
COL7A1-210ENST00000487017 ZNF25P17030 456 aaPredicted RBP14.27□□□□□ -0.12
COL7A1-210ENST00000487017 FAM3BP58499 235 aaPredicted RBP14.27□□□□□ -0.12
COL7A1-210ENST00000487017 GMPPAQ96IJ6 420 aaPredicted RBP14.27□□□□□ -0.12
COL7A1-210ENST00000487017 MEGF10Q96KG7 1140 aa14.27□□□□□ -0.12
COL7A1-210ENST00000487017 AQP10Q96PS8 301 aa14.27□□□□□ -0.12
COL7A1-210ENST00000487017 OR4X1Q8NH49 305 aa14.27□□□□□ -0.12
COL7A1-210ENST00000487017 SMIM12Q96EX1 92 aa14.27□□□□□ -0.12
COL7A1-210ENST00000487017 ZNF207O43670 478 aaKnown RBP14.27□□□□□ -0.13
COL7A1-210ENST00000487017 CYB5R3P00387 301 aaPredicted RBP14.27□□□□□ -0.13
COL7A1-210ENST00000487017 PPP1CCP36873 323 aaKnown RBP14.27□□□□□ -0.13
COL7A1-210ENST00000487017 LBHQ53QV2 105 aaPredicted RBP14.27□□□□□ -0.13
COL7A1-210ENST00000487017 RAB24Q969Q5 203 aa14.27□□□□□ -0.13
COL7A1-210ENST00000487017 ARID1AO14497 2285 aa14.27□□□□□ -0.13
COL7A1-210ENST00000487017 SIGLEC5O15389 551 aa14.27□□□□□ -0.13
COL7A1-210ENST00000487017 SIGLEC14Q08ET2 396 aa14.27□□□□□ -0.13
COL7A1-210ENST00000487017 RTP5Q14D33 572 aa14.27□□□□□ -0.13
COL7A1-210ENST00000487017 NHLRC3Q5JS37 347 aa14.27□□□□□ -0.13
COL7A1-210ENST00000487017 PERPQ96FX8 193 aa14.27□□□□□ -0.13
COL7A1-210ENST00000487017 SEMA7AO75326 666 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 HARBI1Q96MB7 349 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 MAP1LC3CQ9BXW4 147 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 FAM206AQ9NX38 181 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 OR2T8A6NH00 312 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 SDHCQ99643 169 aaPredicted RBP14.26□□□□□ -0.13
COL7A1-210ENST00000487017 CFHR5Q9BXR6 569 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 OR2J1Q9GZK6 312 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 ACAA1P09110 424 aaPredicted RBP14.26□□□□□ -0.13
COL7A1-210ENST00000487017 COL8A1P27658 744 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 RIGQ13278 110 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 ADIPOR1Q96A54 375 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 CD1BP29016 333 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms