RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 TAF9BQ9HBM6 251 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 C8orf4Q9NR00 106 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 CNOT2Q9NZN8 540 aaKnown RBP16.94■□□□□ 0.3
USP40-215ENST00000484528 TXNL1O43396 289 aa16.93■□□□□ 0.3
USP40-215ENST00000484528 FUT3P21217 361 aa16.93■□□□□ 0.3
USP40-215ENST00000484528 ZNF137PP52743 207 aa16.93■□□□□ 0.3
USP40-215ENST00000484528 F2RL1P55085 397 aa16.93■□□□□ 0.3
USP40-215ENST00000484528 PNLIPRP3Q17RR3 467 aa16.93■□□□□ 0.3
USP40-215ENST00000484528 NKAPLQ5M9Q1 402 aa16.93■□□□□ 0.3
USP40-215ENST00000484528 RAX2Q96IS3 184 aa16.93■□□□□ 0.3
USP40-215ENST00000484528 RAB9BQ9NP90 201 aa16.93■□□□□ 0.3
USP40-215ENST00000484528 FAM90A10PA6NDY2 464 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 FAM90A7PA6NKC0 464 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 FAM90A23PA8MXZ1 464 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 SC5DO75845 299 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 SLC2A2P11168 524 aaPredicted RBP16.92■□□□□ 0.3
USP40-215ENST00000484528 MYF6P23409 242 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 SLC6A1P30531 599 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 GPR50Q13585 617 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 CXorf66Q5JRM2 361 aaPredicted RBP16.92■□□□□ 0.3
USP40-215ENST00000484528 TRAT1Q6PIZ9 186 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 CDH26Q8IXH8 852 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 FAM71E2Q8N5Q1 922 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 NKAIN3Q8N8D7 197 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 OR52L2PQ8NGH6 319 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 OR2S2Q9NQN1 319 aa16.92■□□□□ 0.3
USP40-215ENST00000484528 CCL24O00175 119 aa16.91■□□□□ 0.3
USP40-215ENST00000484528 PDCD6O75340 191 aa16.91■□□□□ 0.3
USP40-215ENST00000484528 PPP1CCP36873 323 aaKnown RBP16.91■□□□□ 0.3
USP40-215ENST00000484528 LSAMPQ13449 338 aa16.91■□□□□ 0.3
USP40-215ENST00000484528 TMEM30BQ3MIR4 351 aa16.91■□□□□ 0.3
USP40-215ENST00000484528 FAM27D1Q5T7N8 215 aa16.91■□□□□ 0.3
USP40-215ENST00000484528 OR10K2Q6IF99 312 aa16.91■□□□□ 0.3
USP40-215ENST00000484528 NANOGP1Q8N7R0 232 aa16.91■□□□□ 0.3
USP40-215ENST00000484528 MRPL30Q8TCC3 161 aaKnown RBP16.91■□□□□ 0.3
USP40-215ENST00000484528 MCRIP2Q9BUT9 160 aaKnown RBP16.91■□□□□ 0.3
USP40-215ENST00000484528 DCLRE1BQ9H816 532 aa16.91■□□□□ 0.3
USP40-215ENST00000484528 RRP9O43818 475 aaKnown RBP16.9■□□□□ 0.3
USP40-215ENST00000484528 CA11O75493 328 aa16.9■□□□□ 0.3
USP40-215ENST00000484528 MAPK3P27361 379 aaPredicted RBP16.9■□□□□ 0.3
USP40-215ENST00000484528 SOX6P35712 828 aa16.9■□□□□ 0.3
USP40-215ENST00000484528 MORN2Q502X0 79 aa16.9■□□□□ 0.3
USP40-215ENST00000484528 OR8H1Q8NGG4 311 aa16.9■□□□□ 0.3
USP40-215ENST00000484528 ABHD14AQ9BUJ0 271 aa16.9■□□□□ 0.3
USP40-215ENST00000484528 GON7Q9BXV9 100 aa16.9■□□□□ 0.3
USP40-215ENST00000484528 KCNK15Q9H427 330 aa16.9■□□□□ 0.3
USP40-215ENST00000484528 PLCXD1Q9NUJ7 323 aa16.9■□□□□ 0.3
USP40-215ENST00000484528 MBNL3Q9NUK0 354 aaKnown RBP16.9■□□□□ 0.3
USP40-215ENST00000484528 KCNIP1Q9NZI2 227 aa16.9■□□□□ 0.3
USP40-215ENST00000484528 H0YHG0 523 aa16.89■□□□□ 0.29
USP40-215ENST00000484528 CD1AP06126 327 aa16.89■□□□□ 0.29
USP40-215ENST00000484528 GABPB1Q06547 395 aaPredicted RBP16.89■□□□□ 0.29
USP40-215ENST00000484528 FOXE3Q13461 319 aa16.89■□□□□ 0.29
USP40-215ENST00000484528 MMDQ15546 238 aa16.89■□□□□ 0.29
USP40-215ENST00000484528 VAX1Q5SQQ9 334 aa16.89■□□□□ 0.29
USP40-215ENST00000484528 OGFRL1Q5TC84 451 aaPredicted RBP16.89■□□□□ 0.29
USP40-215ENST00000484528 FBLIM1Q8WUP2 373 aa16.89■□□□□ 0.29
USP40-215ENST00000484528 UQCC2Q9BRT2 126 aa16.89■□□□□ 0.29
USP40-215ENST00000484528 MRPL20Q9BYC9 149 aaKnown RBP16.89■□□□□ 0.29
USP40-215ENST00000484528 CST11Q9H112 138 aa16.89■□□□□ 0.29
USP40-215ENST00000484528 NBEAL2Q6ZNJ1 2754 aa16.89■□□□□ 0.29
USP40-215ENST00000484528 LANCL1O43813 399 aa16.88■□□□□ 0.29
USP40-215ENST00000484528 GLAP06280 429 aa16.88■□□□□ 0.29
USP40-215ENST00000484528 VDAC1P21796 283 aa16.88■□□□□ 0.29
USP40-215ENST00000484528 LUMP51884 338 aaPredicted RBP16.88■□□□□ 0.29
USP40-215ENST00000484528 GP2P55259 537 aaKnown RBP16.88■□□□□ 0.29
USP40-215ENST00000484528 CFHR3Q02985 330 aa16.88■□□□□ 0.29
USP40-215ENST00000484528 ACSM3Q53FZ2 586 aa16.88■□□□□ 0.29
USP40-215ENST00000484528 RBM48Q5RL73 367 aaKnown RBP16.88■□□□□ 0.29
USP40-215ENST00000484528 THRSPQ92748 146 aa16.88■□□□□ 0.29
USP40-215ENST00000484528 SULT4A1Q9BR01 284 aa16.88■□□□□ 0.29
USP40-215ENST00000484528 TMED9Q9BVK6 235 aa16.88■□□□□ 0.29
USP40-215ENST00000484528 FKBP14Q9NWM8 211 aa16.88■□□□□ 0.29
USP40-215ENST00000484528 ZNF107Q9UII5 783 aaPredicted RBP16.88■□□□□ 0.29
USP40-215ENST00000484528 JPT1Q9UK76 154 aa16.88■□□□□ 0.29
USP40-215ENST00000484528 ERGIC3Q9Y282 383 aa16.88■□□□□ 0.29
USP40-215ENST00000484528 ELANEP08246 267 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 CNTFRP26992 372 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 CHATP28329 748 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 OR3A3P47888 321 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 CD69Q07108 199 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 C6orf141Q5SZD1 244 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 STEAP3Q658P3 488 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 UNQ9370/PRO34162Q6UXP9 181 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 ODF3L1Q8IXM7 274 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 OR8U1Q8NH10 309 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 RITA1Q96K30 269 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 KCTD7Q96MP8 289 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 DNAH9Q9NYC9 4486 aa16.87■□□□□ 0.29
USP40-215ENST00000484528 IGHG4P01861 327 aa16.86■□□□□ 0.29
USP40-215ENST00000484528 VSIG8P0DPA2 414 aa16.86■□□□□ 0.29
USP40-215ENST00000484528 CDX1P47902 265 aaPredicted RBP16.86■□□□□ 0.29
USP40-215ENST00000484528 C6orf201Q7Z4U5 140 aa16.86■□□□□ 0.29
USP40-215ENST00000484528 LRRTM1Q86UE6 522 aa16.86■□□□□ 0.29
USP40-215ENST00000484528 RNF152Q8N8N0 203 aa16.86■□□□□ 0.29
USP40-215ENST00000484528 NEDD4LQ96PU5 975 aa16.86■□□□□ 0.29
USP40-215ENST00000484528 NICN1Q9BSH3 213 aa16.86■□□□□ 0.29
USP40-215ENST00000484528 FAAP24Q9BTP7 215 aa16.86■□□□□ 0.29
USP40-215ENST00000484528 GHRLQ9UBU3 117 aa16.86■□□□□ 0.29
USP40-215ENST00000484528 WSB1Q9Y6I7 421 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms