RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ULK3Q6PHR2 472 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 P4HA3Q7Z4N8 544 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 NRMQ8IXM6 262 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 SLC35F2Q8IXU6 374 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 BPIFB2Q8N4F0 458 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 ZNF676Q8N7Q3 588 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 ZFP41Q8N8Y5 198 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 GPR32P1Q8NGA4 272 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 OR51S1Q8NGJ8 323 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 OR2A12Q8NGT7 310 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 MFSD8Q8NHS3 518 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 RPS4Y2Q8TD47 263 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 GPX8Q8TED1 209 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 NUS1Q96E22 293 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 GNPNAT1Q96EK6 184 aaPredicted RBP4.14□□□□□ -1.75
USP40-213ENST00000483216 CPNE2Q96FN4 548 aaPredicted RBP4.14□□□□□ -1.75
USP40-213ENST00000483216 C14orf144Q96I85 54 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 ABHD14BQ96IU4 210 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 C2orf50Q96LR7 162 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 DERL3Q96Q80 235 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 OR2M4Q96R27 311 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 ATP6V0BQ99437 205 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 ZNF649Q9BS31 505 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 C19orf24Q9BVV8 132 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 MRPL37Q9BZE1 423 aaKnown RBP4.14□□□□□ -1.75
USP40-213ENST00000483216 TBL1XR1Q9BZK7 514 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 OR8D2Q9GZM6 311 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 ATG10Q9H0Y0 220 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 PTGES2Q9H7Z7 377 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 BEX1Q9HBH7 125 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 APOBEC3BQ9UH17 382 aaKnown RBP4.14□□□□□ -1.75
USP40-213ENST00000483216 GNG8Q9UK08 70 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 FLVCR2Q9UPI3 526 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 AK6Q9Y3D8 172 aaKnown RBP4.14□□□□□ -1.75
USP40-213ENST00000483216 ATRXP46100 2492 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 MKI67P46013 3256 aaKnown RBP4.13□□□□□ -1.75
USP40-213ENST00000483216 GREB1Q4ZG55 1949 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 IDSB3KWA1 339 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 H0Y9J4 135 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 RPL36A-HNRNPH2H7BZ11 118 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 CLDN34H7C241 214 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 M0R129 80 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 BHLHE40O14503 412 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 ITGB1BP1O14713 200 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 CTAG2O75638 210 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 PRH1P02810 166 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 HSPB1P04792 205 aaKnown RBP4.13□□□□□ -1.75
USP40-213ENST00000483216 DCNP07585 359 aaKnown RBP4.13□□□□□ -1.75
USP40-213ENST00000483216 HEXBP07686 556 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 CST2P09228 141 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 OR8U8P0C7N1 319 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 OR12D1P0DN82 309 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 PNMTP11086 282 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 ADRB3P13945 408 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 MSR1P21757 451 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 BCKDHBP21953 392 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 IGHV1-2P23083 117 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 NFYBP25208 207 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 RBMXP38159 391 aaKnown RBP4.13□□□□□ -1.75
USP40-213ENST00000483216 CAMLGP49069 296 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 SPINT3P49223 89 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 PRLHRP49683 370 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 NCBP2P52298 156 aaKnown RBP eCLIP4.13□□□□□ -1.75
USP40-213ENST00000483216 RIPPLY3P57055 190 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 HIST1H3AP68431 136 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 REEP5Q00765 189 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 PRDX4Q13162 271 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 SGCAQ16586 387 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 TAF9Q16594 264 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 GUK1Q16774 197 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 C18orf21Q32NC0 220 aaPredicted RBP4.13□□□□□ -1.75
USP40-213ENST00000483216 SLC25A35Q3KQZ1 300 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 ARHGAP11BQ3KRB8 267 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 MESTQ5EB52 335 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 TMEM31Q5JXX7 168 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 LIPNQ5VXI9 398 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 ETFRF1Q6IPR1 90 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 NPSR1Q6W5P4 371 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 HEPN1Q6WQI6 88 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 FBXW12Q6X9E4 464 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 STAC2Q6ZMT1 411 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 GRINAQ7Z429 371 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 TMED4Q7Z7H5 227 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 GKN2Q86XP6 184 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 TGIF2LYQ8IUE0 185 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 ZFP82Q8N141 532 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 CLDN19Q8N6F1 224 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 ZNF615Q8N8J6 731 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 CCDC54Q8NEL0 328 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 OR4E2Q8NGC2 313 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 OR51L1Q8NGJ5 315 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 OR13C8Q8NGS7 320 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 OR5AK3PQ8NH89 298 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 LINC01006Q8NI28 216 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 NUBPLQ8TB37 319 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 CD300LFQ8TDQ1 290 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 CDS1Q92903 461 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 TVP23CQ96ET8 276 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 GALNT14Q96FL9 552 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 P2RX4Q99571 388 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms