RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 MND1Q9BWT6 205 aa9.57□□□□□ -0.88
SQSTM1-207ENST00000481335 SELENOIQ9C0D9 397 aa9.57□□□□□ -0.88
SQSTM1-207ENST00000481335 FKBP14Q9NWM8 211 aa9.57□□□□□ -0.88
SQSTM1-207ENST00000481335 KCNIP1Q9NZI2 227 aa9.57□□□□□ -0.88
SQSTM1-207ENST00000481335 RGS11O94810 467 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 GNAO1P09471 354 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 REG1BP48304 166 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 FOXE3Q13461 319 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 CXorf66Q5JRM2 361 aaPredicted RBP9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 GLT8D1Q68CQ7 371 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 FAM71F2Q6NXP2 309 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 ZNF695Q8IW36 515 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 KLHL30-AS1Q8NEE0 82 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 OR4K15Q8NH41 348 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 S1PR3Q99500 378 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 P2RX4Q99571 388 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 RASL11BQ9BPW5 248 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 TAF9BQ9HBM6 251 aa9.56□□□□□ -0.88
SQSTM1-207ENST00000481335 IGHV3-43A0A0B4J1X8 118 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 IGHV3-72A0A0B4J1Y9 119 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 PNMA8CA0A1B0GUJ8 204 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 NUDT19A8MXV4 375 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 H0YHG0 523 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 YPEL1O60688 119 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 MPIG6BO95866 241 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 IGF1P05019 195 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 IGHV3-43DP0DP04 118 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 SOX6P35712 828 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 RANBP1P43487 201 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 CDX1P47902 265 aaPredicted RBP9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 LSAMPQ13449 338 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 MORN2Q502X0 79 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 CT45A1Q5HYN5 189 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 C6orf141Q5SZD1 244 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 SIGIRRQ6IA17 410 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 LAIR2Q6ISS4 152 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 C8orf86Q6ZUL3 223 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 BPIFB6Q8NFQ5 453 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 OR8U1Q8NH10 309 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 CT45A3Q8NHU0 189 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 YPEL2Q96QA6 119 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 ABHD14AQ9BUJ0 271 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 BANF2Q9H503 90 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 OR2S2Q9NQN1 319 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 PLSCR3Q9NRY6 295 aa9.55□□□□□ -0.88
SQSTM1-207ENST00000481335 A0A1W2PPK0 400 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 K7EIL1 84 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 SLC31A2O15432 143 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 BPNT1O95861 308 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 IGHG4P01861 327 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 CDK1P06493 297 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 RCC1P18754 421 aaPredicted RBP9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 VDAC1P21796 283 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 VHLP40337 213 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 ZNF134P52741 427 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 C1orf100Q5SVJ3 147 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 UNQ9370/PRO34162Q6UXP9 181 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 MOB1BQ7L9L4 216 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 PRR18Q8N4B5 295 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 OR1L1Q8NH94 360 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 KCNG3Q8TAE7 436 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 UBALD1Q8TB05 177 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 MRPL30Q8TCC3 161 aaKnown RBP9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 TFAP2CQ92754 450 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 GALMQ96C23 342 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 NEDD4LQ96PU5 975 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 TM2D1Q9BX74 207 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 TMEM59Q9BXS4 323 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 GHITMQ9H3K2 345 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 COL7A1Q02388 2944 aa9.54□□□□□ -0.88
SQSTM1-207ENST00000481335 RAMP3O60896 148 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 CD37P11049 281 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 CHATP28329 748 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 RPS27AP62979 156 aaKnown RBP9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 CFHR3Q02985 330 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 GABPB1Q06547 395 aaPredicted RBP9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 KIR2DS1Q14954 304 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 HMGN3Q15651 99 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 ACSM3Q53FZ2 586 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 OR10V1Q8NGI7 309 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 RIMS4Q9H426 269 aaPredicted RBP9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 DCLRE1BQ9H816 532 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 SCN3BQ9NY72 215 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 ABRACLQ9P1F3 81 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 LINC00527Q9UJ94 153 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 MGAT4AQ9UM21 535 aa9.53□□□□□ -0.88
SQSTM1-207ENST00000481335 UBE2QL1A1L167 161 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 CCL24O00175 119 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 ITGB1BP1O14713 200 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 SLC22A1O15245 554 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 HLA-DRB1P01911 266 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 VSIG8P0DPA2 414 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 SRMP19623 302 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 PSMA1P25786 263 aaKnown RBP9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 PSMB8P28062 276 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 HTR2CP28335 458 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 KRTAP10-11P60412 298 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 SPHARQ15513 63 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 MMDQ15546 238 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 TRAM1Q15629 374 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms