RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 NUDT19A8MXV4 375 aa14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 AP4M1O00189 453 aa14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 TXNL1O43396 289 aa14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 CA11O75493 328 aa14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 FUT3P21217 361 aa14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 GP2P55259 537 aaKnown RBP14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 INSL4Q14641 139 aa14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 NANOGP1Q8N7R0 232 aa14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 FAM46BQ96A09 425 aa14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 S1PR3Q99500 378 aa14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 HSPB9Q9BQS6 159 aa14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 UQCC2Q9BRT2 126 aa14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 MBNL3Q9NUK0 354 aaKnown RBP14.77□□□□□ -0.05
CCDC88B-206ENST00000473405 UBE2QL1A1L167 161 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 ERICH4A6NGS2 130 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 CASQ2O14958 399 aaPredicted RBP14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 PDCD6O75340 191 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 GLAP06280 429 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 GNMTQ14749 295 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 C6orf141Q5SZD1 244 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 TRAT1Q6PIZ9 186 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 C5orf24Q7Z6I8 188 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 ZNF695Q8IW36 515 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 BPIFB6Q8NFQ5 453 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 MRPL30Q8TCC3 161 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 TFAP2CQ92754 450 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 DUX3Q96PT4 197 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 TAF9BQ9HBM6 251 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 RAB9BQ9NP90 201 aa14.76□□□□□ -0.05
CCDC88B-206ENST00000473405 RPLP1P05386 114 aaKnown RBP14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 MAPK3P27361 379 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 F2RL1P55085 397 aa14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 CFHR3Q02985 330 aa14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 GPR50Q13585 617 aa14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 FAM27D1Q5T7N8 215 aa14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 STEAP3Q658P3 488 aa14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 TEX38Q6PEX7 206 aa14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 LCNL1Q6ZST4 164 aa14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 RNF152Q8N8N0 203 aa14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 OR8H1Q8NGG4 311 aa14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 THRSPQ92748 146 aa14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 RAX2Q96IS3 184 aa14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 OR2S2Q9NQN1 319 aa14.75□□□□□ -0.05
CCDC88B-206ENST00000473405 H0YHG0 523 aa14.74□□□□□ -0.05
CCDC88B-206ENST00000473405 LANCL1O43813 399 aa14.74□□□□□ -0.05
CCDC88B-206ENST00000473405 MYCNOSP40205 109 aa14.74□□□□□ -0.05
CCDC88B-206ENST00000473405 LSAMPQ13449 338 aa14.74□□□□□ -0.05
CCDC88B-206ENST00000473405 PNLIPRP3Q17RR3 467 aa14.74□□□□□ -0.05
CCDC88B-206ENST00000473405 MORN2Q502X0 79 aa14.74□□□□□ -0.05
CCDC88B-206ENST00000473405 ZNF554Q86TJ5 538 aa14.74□□□□□ -0.05
CCDC88B-206ENST00000473405 ODF3L1Q8IXM7 274 aa14.74□□□□□ -0.05
CCDC88B-206ENST00000473405 GPR61Q9BZJ8 451 aa14.74□□□□□ -0.05
CCDC88B-206ENST00000473405 CHATP28329 748 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 PPP1CCP36873 323 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 FOXE3Q13461 319 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 DEFB136Q30KP8 78 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 UNQ9370/PRO34162Q6UXP9 181 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 LRRTM1Q86UE6 522 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 OR52L2PQ8NGH6 319 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 RASL11BQ9BPW5 248 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 SULT4A1Q9BR01 284 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 ABHD14AQ9BUJ0 271 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 CST11Q9H112 138 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 DCLRE1BQ9H816 532 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 GHRLQ9UBU3 117 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 JPT1Q9UK76 154 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 ERGIC3Q9Y282 383 aa14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 LSM2Q9Y333 95 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-206ENST00000473405 CDK1P06493 297 aa14.72□□□□□ -0.05
CCDC88B-206ENST00000473405 VSIG8P0DPA2 414 aa14.72□□□□□ -0.05
CCDC88B-206ENST00000473405 SOX6P35712 828 aa14.72□□□□□ -0.05
CCDC88B-206ENST00000473405 ACSM3Q53FZ2 586 aa14.72□□□□□ -0.05
CCDC88B-206ENST00000473405 RNLSQ5VYX0 342 aa14.72□□□□□ -0.05
CCDC88B-206ENST00000473405 OR10K2Q6IF99 312 aa14.72□□□□□ -0.05
CCDC88B-206ENST00000473405 DPF1Q92782 380 aa14.72□□□□□ -0.05
CCDC88B-206ENST00000473405 MCRIP2Q9BUT9 160 aaKnown RBP14.72□□□□□ -0.05
CCDC88B-206ENST00000473405 GON7Q9BXV9 100 aa14.72□□□□□ -0.05
CCDC88B-206ENST00000473405 KCNK15Q9H427 330 aa14.72□□□□□ -0.05
CCDC88B-206ENST00000473405 ZNF580Q9UK33 172 aa14.72□□□□□ -0.05
CCDC88B-206ENST00000473405 CCL24O00175 119 aa14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 IGHG4P01861 327 aa14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 IGF1P05019 195 aa14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 UBBP0CG47 229 aa14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 SLC2A2P11168 524 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 CDX1P47902 265 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 RPS27AP62979 156 aaKnown RBP14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 HTD2P86397 168 aa14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 UNC119Q13432 240 aa14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 CXorf66Q5JRM2 361 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 NKAPLQ5M9Q1 402 aa14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 PHYHIPQ92561 330 aa14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 TMED9Q9BVK6 235 aa14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 MND1Q9BWT6 205 aa14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 MRPL20Q9BYC9 149 aaKnown RBP14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 KCNIP1Q9NZI2 227 aa14.71□□□□□ -0.05
CCDC88B-206ENST00000473405 ANKRD65E5RJM6 399 aa14.7□□□□□ -0.06
CCDC88B-206ENST00000473405 ELANEP08246 267 aa14.7□□□□□ -0.06
CCDC88B-206ENST00000473405 HMGN3Q15651 99 aa14.7□□□□□ -0.06
CCDC88B-206ENST00000473405 RBM48Q5RL73 367 aaKnown RBP14.7□□□□□ -0.06
CCDC88B-206ENST00000473405 C1orf100Q5SVJ3 147 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms