RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 FAM27D1Q5T7N8 215 aa12.84□□□□□ -0.35
COL9A3-208ENST00000469802 STEAP3Q658P3 488 aa12.84□□□□□ -0.35
COL9A3-208ENST00000469802 C18orf65Q6ZTR6 163 aa12.84□□□□□ -0.35
COL9A3-208ENST00000469802 MRPL41Q8IXM3 137 aaKnown RBP12.84□□□□□ -0.35
COL9A3-208ENST00000469802 FAM71E2Q8N5Q1 922 aa12.84□□□□□ -0.35
COL9A3-208ENST00000469802 MRPL30Q8TCC3 161 aaKnown RBP12.84□□□□□ -0.35
COL9A3-208ENST00000469802 FAM46BQ96A09 425 aa12.84□□□□□ -0.35
COL9A3-208ENST00000469802 ZFP57Q9NU63 452 aa12.84□□□□□ -0.35
COL9A3-208ENST00000469802 LINC00527Q9UJ94 153 aa12.84□□□□□ -0.35
COL9A3-208ENST00000469802 AP4M1O00189 453 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 SLC35B1P78383 322 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 C1orf100Q5SVJ3 147 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 LRRTM1Q86UE6 522 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 PRR18Q8N4B5 295 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 MS4A15Q8N5U1 240 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 OR51D1Q8NGF3 324 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 OR8H1Q8NGG4 311 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 OR10V1Q8NGI7 309 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 PHYHIPQ92561 330 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 S1PR3Q99500 378 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 MND1Q9BWT6 205 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 CST11Q9H112 138 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 VCXQ9H320 206 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 TAF9BQ9HBM6 251 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 COL7A1Q02388 2944 aa12.83□□□□□ -0.36
COL9A3-208ENST00000469802 UBE2QL1A1L167 161 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 NCBP2LA6PVI3 153 aaKnown RBP12.82□□□□□ -0.36
COL9A3-208ENST00000469802 K7EIL1 84 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 LANCL1O43813 399 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 UBBP0CG47 229 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 VSIG8P0DPA2 414 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 CD37P11049 281 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 CHATP28329 748 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 KRTAP10-11P60412 298 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 CFHR3Q02985 330 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 LSAMPQ13449 338 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 GNMTQ14749 295 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 MORN2Q502X0 79 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 ACSM3Q53FZ2 586 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 C8orf86Q6ZUL3 223 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 ODF3L1Q8IXM7 274 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 RNF152Q8N8N0 203 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 P2RX4Q99571 388 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 ZNF580Q9UK33 172 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 JPT1Q9UK76 154 aa12.82□□□□□ -0.36
COL9A3-208ENST00000469802 H0YHG0 523 aa12.81□□□□□ -0.36
COL9A3-208ENST00000469802 MPIG6BO95866 241 aa12.81□□□□□ -0.36
COL9A3-208ENST00000469802 HTD2P86397 168 aa12.81□□□□□ -0.36
COL9A3-208ENST00000469802 UNC119Q13432 240 aa12.81□□□□□ -0.36
COL9A3-208ENST00000469802 IRF3Q14653 427 aa12.81□□□□□ -0.36
COL9A3-208ENST00000469802 LY6G6FQ5SQ64 297 aa12.81□□□□□ -0.36
COL9A3-208ENST00000469802 KLHL30-AS1Q8NEE0 82 aa12.81□□□□□ -0.36
COL9A3-208ENST00000469802 RBMXL1Q96E39 390 aaKnown RBP12.81□□□□□ -0.36
COL9A3-208ENST00000469802 HSPB9Q9BQS6 159 aa12.81□□□□□ -0.36
COL9A3-208ENST00000469802 SULT4A1Q9BR01 284 aa12.81□□□□□ -0.36
COL9A3-208ENST00000469802 ABHD14AQ9BUJ0 271 aa12.81□□□□□ -0.36
COL9A3-208ENST00000469802 OR2S2Q9NQN1 319 aa12.81□□□□□ -0.36
COL9A3-208ENST00000469802 UCHL1P09936 223 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 F2RL1P55085 397 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 RPS27AP62979 156 aaKnown RBP12.8□□□□□ -0.36
COL9A3-208ENST00000469802 QRFPP83859 136 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 SPHARQ15513 63 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 HMGN3Q15651 99 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 RBM48Q5RL73 367 aaKnown RBP12.8□□□□□ -0.36
COL9A3-208ENST00000469802 OR10K2Q6IF99 312 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 TEX38Q6PEX7 206 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 C5orf24Q7Z6I8 188 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 ZNF695Q8IW36 515 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 OR52L2PQ8NGH6 319 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 TMED9Q9BVK6 235 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 TM2D1Q9BX74 207 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 TMEM59Q9BXS4 323 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 GPR61Q9BZJ8 451 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 DCLRE1BQ9H816 532 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 KCNIP1Q9NZI2 227 aa12.8□□□□□ -0.36
COL9A3-208ENST00000469802 NKX1-2Q9UD57 310 aaPredicted RBP12.8□□□□□ -0.36
COL9A3-208ENST00000469802 NUDT19A8MXV4 375 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 ANKRD65E5RJM6 399 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 SLC22A1O15245 554 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 YPEL1O60688 119 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 RPLP1P05386 114 aaKnown RBP12.79□□□□□ -0.36
COL9A3-208ENST00000469802 PPP1CCP36873 323 aaKnown RBP12.79□□□□□ -0.36
COL9A3-208ENST00000469802 MYCNOSP40205 109 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 FOXE3Q13461 319 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 PNLIPRP3Q17RR3 467 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 NKAPLQ5M9Q1 402 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 GLT8D1Q68CQ7 371 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 SVOPQ8N4V2 548 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 YPEL2Q96QA6 119 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 RASL11BQ9BPW5 248 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 GON7Q9BXV9 100 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 KCNK15Q9H427 330 aa12.79□□□□□ -0.36
COL9A3-208ENST00000469802 WI2-2373I1.2A0A1W2PRP0 233 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 TMEM14DPA8MWL7 114 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 PTGES3LE9PB15 166 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 RRP9O43818 475 aaKnown RBP12.78□□□□□ -0.36
COL9A3-208ENST00000469802 NAPSAO96009 420 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 IGHG4P01861 327 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 IGF1P05019 195 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 SRMP19623 302 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms