RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 SRSF2Q01130 221 aaKnown RBP9.68□□□□□ -0.86
VPS13D-204ENST00000469054 SLC9A3R2Q15599 337 aa9.68□□□□□ -0.86
VPS13D-204ENST00000469054 SSX2Q16385 188 aa9.68□□□□□ -0.86
VPS13D-204ENST00000469054 PNLIPRP3Q17RR3 467 aa9.68□□□□□ -0.86
VPS13D-204ENST00000469054 FAM53AQ6NSI3 398 aaPredicted RBP9.68□□□□□ -0.86
VPS13D-204ENST00000469054 DYNAPQ8N1N2 210 aa9.68□□□□□ -0.86
VPS13D-204ENST00000469054 TMEM86BQ8N661 226 aa9.68□□□□□ -0.86
VPS13D-204ENST00000469054 SSMEM1Q8WWF3 244 aa9.68□□□□□ -0.86
VPS13D-204ENST00000469054 LEAP2Q969E1 77 aa9.68□□□□□ -0.86
VPS13D-204ENST00000469054 DUX5Q96PT3 197 aa9.68□□□□□ -0.86
VPS13D-204ENST00000469054 MMP28Q9H239 520 aa9.68□□□□□ -0.86
VPS13D-204ENST00000469054 JPT1Q9UK76 154 aa9.68□□□□□ -0.86
VPS13D-204ENST00000469054 DSCAML1Q8TD84 2053 aa9.68□□□□□ -0.86
VPS13D-204ENST00000469054 A0A1W2PPE3 182 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 CCDC160A6NGH7 325 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 TRDCB7Z8K6 153 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 BUB1B-PAK6H3BSN5 160 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 YPEL1O60688 119 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 APOA1P02647 267 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 FCGR3AP08637 254 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 SCTP09683 121 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 PAX6P26367 422 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 IER3P46695 156 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 GNG2P59768 71 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 UBA52P62987 128 aaKnown RBP9.67□□□□□ -0.86
VPS13D-204ENST00000469054 HLA-DRB3P79483 266 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 PITPNAQ00169 270 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 SRSF7Q16629 238 aaKnown RBP eCLIP9.67□□□□□ -0.86
VPS13D-204ENST00000469054 KRTAP21-3Q3LHN1 58 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 MORN2Q502X0 79 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 IZUMO1Q8IYV9 350 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 LINC00311Q8N616 119 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 C8orf31Q8N9H6 132 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 OR52L2PQ8NGH6 319 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 OR10V1Q8NGI7 309 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 DYNC2LI1Q8TCX1 351 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 IL1F10Q8WWZ1 152 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 YPEL2Q96QA6 119 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 RBM38Q9H0Z9 239 aaKnown RBP9.67□□□□□ -0.86
VPS13D-204ENST00000469054 DPAGT1Q9H3H5 408 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 ZNF230Q9UIE0 474 aaPredicted RBP9.67□□□□□ -0.86
VPS13D-204ENST00000469054 POMT1Q9Y6A1 747 aa9.67□□□□□ -0.86
VPS13D-204ENST00000469054 NIPBLQ6KC79 2804 aaeCLIP9.67□□□□□ -0.86
VPS13D-204ENST00000469054 SMIM31A0A1B0GVY4 71 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 LY6LH3BQJ8 138 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 HPGDSO60760 199 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 IGHV4-59P01825 116 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 EIF4EP06730 217 aaKnown RBP9.66□□□□□ -0.86
VPS13D-204ENST00000469054 DTYMKP23919 212 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 CEACAM3P40198 252 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 MNDAP41218 407 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 KIR2DS4P43632 304 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 ZNF134P52741 427 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 GNMTQ14749 295 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 KIR2DS1Q14954 304 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 AANATQ16613 207 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 LY6G6FQ5SQ64 297 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 TMEM69Q5SWH9 247 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 STEAP3Q658P3 488 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 DTX3Q8N9I9 347 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 ZNF439Q8NDP4 499 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 OR10X1Q8NGY0 326 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 ZFAND2BQ8WV99 257 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 NUDCD2Q8WVJ2 157 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 SSX3Q99909 188 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 OCSTAMPQ9BR26 566 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 AUNIPQ9H7T9 357 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 TNFRSF19Q9NS68 423 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 CCDC59Q9P031 241 aaKnown RBP9.66□□□□□ -0.86
VPS13D-204ENST00000469054 RSL24D1Q9UHA3 163 aaKnown RBP9.66□□□□□ -0.86
VPS13D-204ENST00000469054 AMMECR1Q9Y4X0 333 aaPredicted RBP9.66□□□□□ -0.86
VPS13D-204ENST00000469054 HILPDAQ9Y5L2 63 aa9.66□□□□□ -0.86
VPS13D-204ENST00000469054 BTBD17A6NE02 478 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 VGLL3A8MV65 326 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 OOSP1A8MZH6 123 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 ZNF701M0R085 212 aaPredicted RBP9.65□□□□□ -0.86
VPS13D-204ENST00000469054 SLC31A2O15432 143 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 FABP7O15540 132 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 SSX5O60225 188 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 RGS11O94810 467 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 RNASE1P07998 156 aaKnown RBP9.65□□□□□ -0.86
VPS13D-204ENST00000469054 GSTT2P0CG29 244 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 GSTT2BP0CG30 244 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 ELK1P19419 428 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 ZBTB25P24278 435 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 PPP1CCP36873 323 aaKnown RBP9.65□□□□□ -0.86
VPS13D-204ENST00000469054 MADCAM1Q13477 382 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 LRRC75BQ2VPJ9 315 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 CT45A1Q5HYN5 189 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 TPTE2P1Q5T6R2 138 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 C16orf87Q6PH81 154 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 Q6ZS49 121 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 SLC25A48Q6ZT89 311 aaKnown RBP9.65□□□□□ -0.86
VPS13D-204ENST00000469054 OR4A4PQ8NGN8 299 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 OR5R1Q8NH85 324 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 CT45A3Q8NHU0 189 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 FAM216AQ8WUB2 273 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 MAFIPQ8WZ33 124 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 RPEQ96AT9 228 aa9.65□□□□□ -0.86
VPS13D-204ENST00000469054 ST6GALNAC5Q9BVH7 336 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms