RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 OR2A4O95047 310 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 AIFM1O95831 613 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 NUDT14O95848 222 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 LALBAP00709 142 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 PTHP01270 115 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 IGHMP01871 453 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 SERPINE1P05121 402 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 OR4A8P0C604 315 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 G6PCP35575 357 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 MTPNP58546 118 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 NCS1P62166 190 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 BTN1A1Q13410 526 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 EBPQ15125 230 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 NECTIN1Q15223 517 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 SIX1Q15475 284 aaPredicted RBP3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ECSCRQ19T08 205 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNF181Q2M3W8 571 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 CCSMST1Q4G0I0 132 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 TTC32Q5I0X7 151 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 PAGE3Q5JUK9 113 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNF506Q5JVG8 444 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 AVPI1Q5T686 147 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ANKRD22Q5VYY1 191 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 SLC35E4Q6ICL7 350 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 C20orf196Q8IYI0 205 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 TMEM86AQ8N2M4 240 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 DEFB125Q8N687 156 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNF433Q8N7K0 673 aaPredicted RBP3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 OR1N2Q8NGR9 330 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 OR13C8Q8NGS7 320 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 RFESDQ8TAC1 157 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 JOSD2Q8TAC2 188 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 VN1R17PQ8TDU5 208 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNF418Q8TF45 676 aaPredicted RBP3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNF524Q96C55 264 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ISOC1Q96CN7 298 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 C18orf12Q96KH6 178 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 BTN2A3PQ96KV6 586 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 OR2A7Q96R45 310 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 TMEM70Q9BUB7 260 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 PITPNM3Q9BZ71 974 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 SMIM3Q9BZL3 60 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 CHST6Q9GZX3 395 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 OR2D2Q9H210 308 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 GNB4Q9HAV0 340 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 PRTFDC1Q9NRG1 225 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 TBX21Q9UL17 535 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ORC6Q9Y5N6 252 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 KCNE3Q9Y6H6 103 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 HSPE1-MOB4S4R3N1 261 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ABCC12Q96J65 1359 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ARHGAP35Q9NRY4 1499 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 IGHV1OR21-1A0A087WYE8 117 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 IGLV9-49A0A0B4J1Y8 123 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 TRAV8-2A0A0B4J237 113 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 TRAV26-2A0A0B4J265 109 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 TMEM218A2RU14 115 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 FABP5P3A8MUU1 101 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 SHISA9B4DS77 424 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 C9JAW5 83 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 H3BQF6 201 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 M0R2Z0 102 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 SLC17A2O00624 439 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 RBFOX2O43251 390 aaKnown RBP eCLIP3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 PIAS1O75925 651 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 NDUFC2O95298 119 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 MMP7P09237 267 aaPredicted RBP3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 PATE4P0C8F1 98 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 FGF6P10767 208 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 SLC2A2P11168 524 aaPredicted RBP3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 SPNP16150 400 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 PRSS3P35030 304 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 LHX2P50458 406 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 RPS25P62851 125 aaKnown RBP3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 HTR4Q13639 388 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 C1DQ13901 141 aaKnown RBP3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 P2RY6Q15077 328 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 PAFAH1B3Q15102 231 aaKnown RBP3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 GSG1Q2KHT4 349 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 TIMM50Q3ZCQ8 353 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 TSPO2Q5TGU0 170 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 NPWQ8N729 165 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 TMEM178AQ8NBL3 297 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 OR8B12Q8NGG6 310 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 FAM151AQ8WW52 585 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 STARD4Q96DR4 205 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 LRRC61Q9BV99 259 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 NKX6-2Q9C056 277 aaPredicted RBP3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 OR2H1Q9GZK4 316 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 WDR13Q9H1Z4 485 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 IFI27L2Q9H2X8 130 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 PTGES2Q9H7Z7 377 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 EFCAB1Q9HAE3 211 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 CACYBPQ9HB71 228 aaKnown RBP3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 TAF9BQ9HBM6 251 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 EXOSC3Q9NQT5 275 aaKnown RBP3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 RBFOX1Q9NWB1 397 aaKnown RBP3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 MED11Q9P086 117 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 MCTS1Q9ULC4 181 aaKnown RBP3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 HIGD1AQ9Y241 93 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms