RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 FRYLO94915 3013 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 GPR179Q6PRD1 2367 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 TRAV19A0A0A6YYK7 116 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 G3V2L1 256 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 MPPED1O15442 326 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 HCRTO43612 131 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 NUDT3O95989 172 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 OXTP01178 125 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 IGLC1P0CG04 106 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 VPREB1P12018 145 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 PVRP15151 417 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 LMO2P25791 158 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 CD34P28906 385 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 PRDX3P30048 256 aaKnown RBP4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 SRIP30626 198 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 RPS10P46783 165 aaKnown RBP4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 OR3A2P47893 321 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 EFNB2P52799 333 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 RPS28P62857 69 aaKnown RBP4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 PAFAH1B3Q15102 231 aaKnown RBP4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 SSX1Q16384 188 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 LPAL2Q16609 132 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 FAM174BQ3ZCQ3 159 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 MIIPQ5JXC2 388 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 SFTPA1Q8IWL2 248 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 C20orf196Q8IYI0 205 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM86BQ8N661 226 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 OR52E2Q8NGJ4 325 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 OR1S2Q8NGQ3 325 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 OR2T35Q8NGX2 323 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM170AQ8WVE7 144 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF419Q96HQ0 510 aaPredicted RBP4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 SEC22AQ96IW7 307 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 ADTRPQ96IZ2 230 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 ATP5SQ99766 215 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 ATG5Q9H1Y0 275 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 OR52D1Q9H346 318 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 RPS10P5Q9NQ39 176 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 PHPT1Q9NRX4 125 aaPredicted RBP4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 CA10Q9NS85 328 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 LSM5Q9Y4Y9 91 aaKnown RBP4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 SPAG17Q6Q759 2223 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 TICRRQ7Z2Z1 1910 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 BORCS7-ASMTA0A0B4J1R7 106 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 A0A1B0GW64 132 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 MYBPHLA2RUH7 354 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 B4DEV8 164 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 MFNGO00587 321 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 XRCC3O43542 346 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 DIRAS1O95057 198 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 NXPH3O95157 252 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF682O95780 498 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 DBIP07108 87 aaKnown RBP4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 SP1P08047 785 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 CXCL3P19876 107 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 EVI2AP22794 236 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 GZMMP51124 257 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 CTBP2P56545 445 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 FMODQ06828 376 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 TGIF1Q15583 401 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 HMGN3Q15651 99 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 PLK5Q496M5 336 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 OR2T2Q6IF00 324 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 IL34Q6ZMJ4 242 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 Q6ZSR6 202 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 Q6ZVH6 145 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST2H3AQ71DI3 136 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 ABHD12Q8N2K0 398 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM178AQ8NBL3 297 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 SYT8Q8NBV8 401 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 SECTM1Q8WVN6 248 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 NDRG1Q92597 394 aaKnown RBP4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 TSPAN32Q96QS1 320 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 POLR2J3Q9H1A7 115 aaKnown RBP4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 NMRAL1Q9HBL8 299 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 FLRT3Q9NZU0 649 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 ANXA10Q9UJ72 324 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 LOXL2Q9Y4K0 774 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 RAI2Q9Y5P3 530 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 INSL5Q9Y5Q6 135 aa4.05□□□□□ -1.76
CCDC88A-209ENST00000456975 DOCK6Q96HP0 2047 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 A0A1B0GX51 115 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 LRRC30A6NM36 301 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 FAM166BA8MTA8 275 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 HMSDA8MTL9 139 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 SIRPB1O00241 398 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 CDRT1O95170 752 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 NDUFA7O95182 113 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 MOSP00540 346 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST1H2ABP04908 130 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 ERGP11308 486 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 NTF3P20783 257 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 RPA3P35244 121 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 ZFP36L2P47974 494 aaKnown RBP4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 EMP1P54849 157 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 PFN3P60673 137 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 ARG2P78540 354 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 RAB40BQ12829 278 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 PSG7Q13046 419 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms