RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ATP6V0BQ99437 205 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 HES7Q9BYE0 225 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 HEXA-AS1Q9H8Q6 139 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 FGF16O43320 207 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 GALR2O43603 387 aaPredicted RBP11.66□□□□□ -0.54
USP40-208ENST00000450966 SELENOTP62341 195 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 RELBQ01201 579 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 SRSF5Q13243 272 aaKnown RBP11.66□□□□□ -0.54
USP40-208ENST00000450966 SHBQ15464 509 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 KCNS1Q96KK3 526 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 AMBPP02760 352 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 GNB4Q9HAV0 340 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 C7orf71A4D174 169 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 FRG2CA6NGY1 282 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 HS3ST1O14792 307 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 MEOX1P50221 254 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 CCSMST1Q4G0I0 132 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 TIMM23BQ5SRD1 257 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 SPSB1Q96BD6 273 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 PIMREGQ9BSJ6 248 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 ZNF665Q9H7R5 613 aa11.66□□□□□ -0.54
USP40-208ENST00000450966 AKAP11Q9UKA4 1901 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 FGF17O60258 216 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 HIST1H1AQ02539 215 aaPredicted RBP11.65□□□□□ -0.54
USP40-208ENST00000450966 CA13Q8N1Q1 262 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 TMEM56Q96MV1 263 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 TSPAN32Q96QS1 320 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 SMOC1Q9H4F8 434 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 CST9LQ9H4G1 147 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 TRAV9-2A0A087WT02 112 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 TRBV5-3A0A0A0MS03 114 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 ID4P47928 161 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 G6PC2Q9NQR9 355 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.65□□□□□ -0.54
USP40-208ENST00000450966 FAM157CP0CG43 387 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 RPS27P42677 84 aaKnown RBP11.65□□□□□ -0.54
USP40-208ENST00000450966 VAX1Q5SQQ9 334 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 FAM71F2Q6NXP2 309 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 MRGPREQ86SM8 312 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 OR1L4Q8NGR5 311 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 DNASE2BQ8WZ79 361 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 ANXA10Q9UJ72 324 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 SDK1Q7Z5N4 2213 aa11.65□□□□□ -0.54
USP40-208ENST00000450966 MYO5AQ9Y4I1 1855 aaKnown RBP11.65□□□□□ -0.55
USP40-208ENST00000450966 EFSO43281 561 aa11.65□□□□□ -0.55
USP40-208ENST00000450966 IGHV3-9P01782 118 aa11.65□□□□□ -0.55
USP40-208ENST00000450966 RNF122Q9H9V4 155 aa11.65□□□□□ -0.55
USP40-208ENST00000450966 PSG11Q9UQ72 335 aa11.65□□□□□ -0.55
USP40-208ENST00000450966 A0A1B0GU03 582 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 SRP19P09132 144 aaKnown RBP11.64□□□□□ -0.55
USP40-208ENST00000450966 KIAA0040Q15053 153 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 LIMS2Q7Z4I7 341 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 BHLHE23Q8NDY6 225 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 OR52E5Q8NH55 327 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 TNFSF11O14788 317 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 RNFT1Q5M7Z0 435 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 HOGA1Q86XE5 327 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 ZNF664Q8N3J9 261 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 PLA2G2FQ9BZM2 168 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 PLAC1Q9HBJ0 212 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 CITO14578 2027 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 BCORP1Q8N888 145 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 MRAP2Q96G30 205 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 SEBOXQ9HB31 216 aaPredicted RBP11.64□□□□□ -0.55
USP40-208ENST00000450966 AURKAIP1Q9NWT8 199 aaPredicted RBP11.64□□□□□ -0.55
USP40-208ENST00000450966 LRRC3CA6NJW4 275 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 SH2D1BO14796 132 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 ASCL4Q6XD76 172 aa11.64□□□□□ -0.55
USP40-208ENST00000450966 GEMIN7Q9H840 131 aaKnown RBP11.64□□□□□ -0.55
USP40-208ENST00000450966 NPSP0C0P6 89 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 PNLIPP16233 465 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 LSM11P83369 360 aaKnown RBP eCLIP11.63□□□□□ -0.55
USP40-208ENST00000450966 MEF2CQ06413 473 aaPredicted RBP11.63□□□□□ -0.55
USP40-208ENST00000450966 LYZL2Q7Z4W2 148 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 C20orf196Q8IYI0 205 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 OR5AS1Q8N127 324 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 C20orf141Q9NUB4 165 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 SEMA5BQ9P283 1151 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 HDGFL3Q9Y3E1 203 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 GAGE12BA1L429 117 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 NDUFB4O95168 129 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 ORM1P02763 201 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 KLRB1Q12918 225 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 PRTGQ2VWP7 1150 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 WFDC8Q8IUA0 241 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 OR4X2Q8NGF9 303 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 APOBEC4Q8WW27 367 aaKnown RBP11.63□□□□□ -0.55
USP40-208ENST00000450966 EDARADDQ8WWZ3 215 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 OR8B2Q96RD0 313 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 QTRT1Q9BXR0 403 aaKnown RBP11.63□□□□□ -0.55
USP40-208ENST00000450966 M0R3E3 92 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 LAIR2Q6ISS4 152 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 RHBDD2Q6NTF9 364 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 CYP2G1PQ6ZSU1 146 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 RPEQ96AT9 228 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 POM121L2Q96KW2 1035 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 ST20Q9HBF5 79 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 COX11Q9Y6N1 276 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 TMEM238C9JI98 176 aa11.63□□□□□ -0.55
USP40-208ENST00000450966 M0R135 149 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms