RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 STPG1Q5TH74 334 aa2.98□□□□□ -1.93
SYNE1-212ENST00000423061 MRPL16Q9NX20 251 aaKnown RBP2.98□□□□□ -1.93
SYNE1-212ENST00000423061 TAAR2Q9P1P5 351 aa2.98□□□□□ -1.93
SYNE1-212ENST00000423061 CRYBA2P53672 197 aa2.98□□□□□ -1.93
SYNE1-212ENST00000423061 CXorf66Q5JRM2 361 aaPredicted RBP2.98□□□□□ -1.93
SYNE1-212ENST00000423061 TEX29Q8N6K0 151 aa2.98□□□□□ -1.93
SYNE1-212ENST00000423061 KCNE4Q8WWG9 221 aa2.98□□□□□ -1.93
SYNE1-212ENST00000423061 SLC5A6Q9Y289 635 aa2.98□□□□□ -1.93
SYNE1-212ENST00000423061 MRPS18BQ9Y676 258 aaKnown RBP2.98□□□□□ -1.93
SYNE1-212ENST00000423061 GAGE12HA6NDE8 117 aa2.98□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF217O75362 1048 aa2.98□□□□□ -1.93
SYNE1-212ENST00000423061 GCSHP23434 173 aa2.98□□□□□ -1.93
SYNE1-212ENST00000423061 TMEM225Q6GV28 225 aa2.98□□□□□ -1.93
SYNE1-212ENST00000423061 TP53BP1Q12888 1972 aaPredicted RBP2.98□□□□□ -1.93
SYNE1-212ENST00000423061 G6PCP35575 357 aa2.98□□□□□ -1.93
SYNE1-212ENST00000423061 RGRP47804 291 aa2.98□□□□□ -1.93
SYNE1-212ENST00000423061 MRPL18Q9H0U6 180 aaKnown RBP2.98□□□□□ -1.93
SYNE1-212ENST00000423061 UNC13CQ8NB66 2214 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 NDUFB4O95168 129 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 HMGN2P05204 90 aaKnown RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 RAE1P78406 368 aaKnown RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 MYBPHQ13203 477 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 SPATA31B1PQ5VZV4 182 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 FAM174AQ8TBP5 190 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 STRADBQ9C0K7 418 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 CDH20Q9HBT6 801 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 TOMM40O96008 361 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 ACVR1Q04771 509 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 DDIT4LQ96D03 193 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 NKX2-8O15522 239 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 CELA3AP09093 270 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 CHD5Q8TDI0 1954 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 M0QZQ0 153 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 CHST1O43916 411 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 PPIFP30405 207 aaKnown RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 WASP42768 502 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 GRB2P62993 217 aaKnown RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 PSG3Q16557 428 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 PPP1R35Q8TAP8 253 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 LINC00470Q9BZP3 86 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 A0A1B0GWA3 101 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 A0A1W2PP11 408 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 NKX2-1P43699 371 aaPredicted RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF133P52736 654 aaPredicted RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 NKX2-4Q9H2Z4 354 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 PGPEP1Q9NXJ5 209 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 COL11A2P13942 1736 aaPredicted RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 OR1D4P47884 311 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 CTXN1P60606 82 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 CSRP2Q16527 193 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 FBXW12Q6X9E4 464 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 SLC22A24Q8N4F4 322 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 IGKV6D-21A0A0A0MT36 114 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 LHX2P50458 406 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 NSDHLQ15738 373 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 FAM71F2Q6NXP2 309 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 BHLHA9Q7RTU4 235 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 SYNGR4O95473 234 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 IGLC1P0CG04 106 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 APOBEC1P41238 236 aaKnown RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 DCBLD2Q96PD2 775 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 TSPAN32Q96QS1 320 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 SPANXB1Q9NS25 103 aaPredicted RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 CFIP05156 583 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 CATR1Q13166 79 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 DAZLQ92904 295 aaKnown RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 SOX21Q9Y651 276 aaPredicted RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 HEATR5BQ9P2D3 2071 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 MRPL2Q5T653 305 aaKnown RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 CCDC144NLQ6NUI1 221 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 MRGPRGQ86SM5 289 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 GFI1Q99684 422 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 MSRB2Q9Y3D2 182 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 NEUROG3Q9Y4Z2 214 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 CT45A10P0DMU9 189 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 GPR6P46095 362 aaPredicted RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 PLP2Q04941 152 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 MALLQ13021 153 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 OR1K1Q8NGR3 316 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 CT55Q8WUE5 264 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 OR4C12Q96R67 309 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 MMP25Q9NPA2 562 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 FLRT3Q9NZU0 649 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 GBF1Q92538 1859 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF646O15015 1829 aaPredicted RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 SIP14410 1827 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 KIR2DL2P43627 348 aaPredicted RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 MEP1BQ16820 701 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 GPHA2Q96T91 129 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 PLPP3O14495 311 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 PRTN3P24158 256 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 GAGE2BQ13066 116 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 SRSF9Q13242 221 aaKnown RBP eCLIP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 C5orf64Q2M2E5 130 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 GAGE2EQ4V326 116 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 TRMT12Q53H54 448 aaKnown RBP2.97□□□□□ -1.93
SYNE1-212ENST00000423061 SPRYD7Q5W111 196 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 SFTA2Q6UW10 78 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 C20orf141Q9NUB4 165 aa2.97□□□□□ -1.93
SYNE1-212ENST00000423061 GAGE2DQ9UEU5 116 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms