RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 C9J4A7 227 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 KLRC4-KLRK1H3BQV0 150 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 ENSAO43768 121 aaKnown RBP4.07□□□□□ -1.76
VPS13A-207ENST00000419472 VAMP5O95183 116 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 HLA-GP17693 338 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 DIO3P55073 304 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 FGF8P55075 233 aaPredicted RBP4.07□□□□□ -1.76
VPS13A-207ENST00000419472 WNT4P56705 351 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 ERVK11-1P61568 191 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 ATP6V1FQ16864 119 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 ADAM5Q6NVV9 412 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 TOMM5Q8N4H5 51 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 OR2D3Q8NGH3 330 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 OR5D18Q8NGL1 313 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 OR1J4Q8NGS1 313 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 SPATA3Q8NHX4 192 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 ZNF519Q8TB69 540 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 RNASEH2CQ8TDP1 164 aaKnown RBP4.07□□□□□ -1.76
VPS13A-207ENST00000419472 TWIST2Q8WVJ9 160 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 TMEM239Q8WW34 195 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 ASB13Q8WXK3 278 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 FGF13Q92913 245 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 ARL11Q969Q4 196 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 PCBD2Q9H0N5 130 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 PDFQ9HBH1 243 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 ASF1BQ9NVP2 202 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 CACFD1Q9UGQ2 172 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 OPN4Q9UHM6 478 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 SAMD4AQ9UPU9 718 aaKnown RBP4.07□□□□□ -1.76
VPS13A-207ENST00000419472 ZNF256Q9Y2P7 627 aaPredicted RBP4.07□□□□□ -1.76
VPS13A-207ENST00000419472 FAM186AA6NE01 2351 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 NOTCH4Q99466 2003 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 WDFY3Q8IZQ1 3526 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 A0A087WW49 117 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 FXYD6-FXYD2A0A087WZ82 144 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 DNAJC9-AS1A6NH13 148 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 FAM220BPB1ANY3 271 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 EEF1E1O43324 174 aaKnown RBP4.07□□□□□ -1.76
VPS13A-207ENST00000419472 MPZL2O60487 215 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 SOD1P00441 154 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 CATP04040 527 aaKnown RBP4.07□□□□□ -1.76
VPS13A-207ENST00000419472 IL5P05113 134 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 GZMBP10144 247 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 GPM6AP51674 278 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 EMP2P54851 167 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 ERVFC1-1P60608 527 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 ERVK-16P61578 105 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 EIF5AP63241 154 aaKnown RBP4.07□□□□□ -1.76
VPS13A-207ENST00000419472 PAFAH1B2P68402 229 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 TEAD2Q15562 447 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 CD200R1LQ6Q8B3 271 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 FAM151BQ6UXP7 276 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 C12orf54Q6X4T0 127 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 SSX7Q7RTT5 188 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 TMEM25Q86YD3 366 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 OR6V1Q8N148 313 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 ZFP41Q8N8Y5 198 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 OR13D1Q8NGV5 346 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 GALNT14Q96FL9 552 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 CPNE2Q96FN4 548 aaPredicted RBP4.07□□□□□ -1.76
VPS13A-207ENST00000419472 YPEL4Q96NS1 127 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 PRRT1Q99946 306 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 POLR2J2Q9GZM3 115 aaKnown RBP4.07□□□□□ -1.76
VPS13A-207ENST00000419472 FXYD6Q9H0Q3 95 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 TUBB1Q9H4B7 451 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 UBQLN4Q9NRR5 601 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 FLVCR1Q9Y5Y0 555 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 MYLKQ15746 1914 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 SPTBN2O15020 2390 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 MIA3Q5JRA6 1907 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 A0A1B0GWB2 263 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 PAX4O43316 350 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 OR2J2O76002 312 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 CRYAAP02489 173 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 APODP05090 189 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 SOD3P08294 240 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 GABRG2P18507 467 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 BRS3P32247 399 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 GZMMP51124 257 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 RAB7AP51149 207 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 CCR8P51685 355 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 CAV3P56539 151 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 PDGFRLQ15198 375 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 HMGN3Q15651 99 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 ZNF678Q5SXM1 525 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 UFSP1Q6NVU6 142 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 HEPN1Q6WQI6 88 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 RFLNAQ6ZTI6 216 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 MYPOPQ86VE0 399 aaPredicted RBP4.06□□□□□ -1.76
VPS13A-207ENST00000419472 CALHM3Q86XJ0 350 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 KCNRGQ8N5I3 272 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 OR11G2Q8NGC1 345 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 OR4C6Q8NH72 309 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 SPPL2AQ8TCT8 520 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 CLN6Q9NWW5 311 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 GSKIPQ9P0R6 139 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 KIAA1549LQ6ZVL6 1849 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 CELSR3Q9NYQ7 3312 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 IGHV3OR16-12A0A075B7B8 117 aa4.06□□□□□ -1.76
VPS13A-207ENST00000419472 E9PLD3 99 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms