RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 TAF15Q92804 592 aaKnown RBP eCLIP10.08□□□□□ -0.8
SKA1-203ENST00000417656 MALSU1Q96EH3 234 aa10.08□□□□□ -0.8
SKA1-203ENST00000417656 MEGF9Q9H1U4 602 aa10.08□□□□□ -0.8
SKA1-203ENST00000417656 DCSTAMPQ9H295 470 aa10.08□□□□□ -0.8
SKA1-203ENST00000417656 RIMS4Q9H426 269 aaPredicted RBP10.08□□□□□ -0.8
SKA1-203ENST00000417656 Q9N2K0 584 aa10.08□□□□□ -0.8
SKA1-203ENST00000417656 ABRACLQ9P1F3 81 aa10.08□□□□□ -0.8
SKA1-203ENST00000417656 DPM3Q9P2X0 92 aa10.08□□□□□ -0.8
SKA1-203ENST00000417656 SCOCQ9UIL1 159 aa10.08□□□□□ -0.8
SKA1-203ENST00000417656 ELF5Q9UKW6 265 aaPredicted RBP10.08□□□□□ -0.8
SKA1-203ENST00000417656 SPATA2Q9UM82 520 aa10.08□□□□□ -0.8
SKA1-203ENST00000417656 AMMECR1Q9Y4X0 333 aaPredicted RBP10.08□□□□□ -0.8
SKA1-203ENST00000417656 TMEM235A6NFC5 223 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 SERPINE3A8MV23 424 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 LEUTXA8MZ59 168 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 BUB1B-PAK6H3BSN5 160 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 GPR137BO60478 399 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 TMEM127O75204 238 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 SCGNO76038 276 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 FCGR3AP08637 254 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 PPP1CCP36873 323 aaKnown RBP10.07□□□□□ -0.8
SKA1-203ENST00000417656 ARFRP1Q13795 201 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 IZUMO1Q8IYV9 350 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 ZNF439Q8NDP4 499 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 OR5R1Q8NH85 324 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 IL1F10Q8WWZ1 152 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 MAFIPQ8WZ33 124 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 TOMM40LQ969M1 308 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 OR2S2Q9NQN1 319 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.07□□□□□ -0.8
SKA1-203ENST00000417656 JPT1Q9UK76 154 aa10.07□□□□□ -0.8
SKA1-203ENST00000417656 FAM181BA6NEQ2 426 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 VGLL3A8MV65 326 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 LY6LH3BQJ8 138 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 CEACAM3P40198 252 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 RAB13P51153 203 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 MADCAM1Q13477 382 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 DIAPH2-AS1Q14236 149 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 SPCS2Q15005 226 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 AANATQ16613 207 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 CDNFQ49AH0 187 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 UBE2NLQ5JXB2 153 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 C16orf87Q6PH81 154 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 SAMD12Q8N8I0 201 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 OR10X1Q8NGY0 326 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 PIFOQ8TCI5 191 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 NUDCD2Q8WVJ2 157 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 RPEQ96AT9 228 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 CREB3L1Q96BA8 519 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 PHF21AQ96BD5 680 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 GALMQ96C23 342 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 ABCB10Q9NRK6 738 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 MGAT4AQ9UM21 535 aa10.06□□□□□ -0.8
SKA1-203ENST00000417656 TRAV18A0A075B6X5 111 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 HSD17B6O14756 317 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 NOL3O60936 208 aaKnown RBP10.05□□□□□ -0.8
SKA1-203ENST00000417656 GSTP1P09211 210 aaKnown RBP10.05□□□□□ -0.8
SKA1-203ENST00000417656 SCTP09683 121 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 HTD2P86397 168 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 ARL6IP1Q15041 203 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 ZNF260Q3ZCT1 412 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 Q3ZCU0 254 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 MORN2Q502X0 79 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 HACD4Q5VWC8 232 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 DHRS7BQ6IAN0 325 aaPredicted RBP10.05□□□□□ -0.8
SKA1-203ENST00000417656 LINC00311Q8N616 119 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 C8orf31Q8N9H6 132 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 DTX3Q8N9I9 347 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 RAB2BQ8WUD1 216 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 ABHD14AQ9BUJ0 271 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 PARP12Q9H0J9 701 aaKnown RBP10.05□□□□□ -0.8
SKA1-203ENST00000417656 OR1A1Q9P1Q5 309 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 COMMD3Q9UBI1 195 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 ZNF230Q9UIE0 474 aaPredicted RBP10.05□□□□□ -0.8
SKA1-203ENST00000417656 TCF19Q9Y242 345 aa10.05□□□□□ -0.8
SKA1-203ENST00000417656 A0A0A6YYH2 397 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 IGKV1-6A0A0C4DH72 117 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 A0A1W2PPI3 338 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 A6NJ64 397 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 POM121CA8CG34 1229 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 OOSP1A8MZH6 123 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 TRDCB7Z8K6 153 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 FABP7O15540 132 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 CHST1O43916 411 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 EIF4EP06730 217 aaKnown RBP10.04□□□□□ -0.8
SKA1-203ENST00000417656 HKR1P10072 659 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 IL3RAP26951 378 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 TALDO1P37837 337 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 REG1BP48304 166 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 RORCP51449 518 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 DYNLT3P51808 116 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 ZNF134P52741 427 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 TMBIM6P55061 237 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 GNG2P59768 71 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 HERPUD1Q15011 391 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 FBLN7Q53RD9 439 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 CT45A1Q5HYN5 189 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 STEAP3Q658P3 488 aa10.04□□□□□ -0.8
SKA1-203ENST00000417656 SLC25A48Q6ZT89 311 aaKnown RBP10.04□□□□□ -0.8
SKA1-203ENST00000417656 TMEM219Q86XT9 240 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms