RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CCKARP32238 428 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 GFRA1P56159 465 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 ACOT6Q3I5F7 207 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 AARDQ4LEZ3 155 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 PRAMEF20Q5VT98 475 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 VHLLQ6RSH7 139 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 Q8IYB0 196 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 CISD2Q8N5K1 135 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 RNASE11Q8TAA1 199 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 SAP25Q8TEE9 199 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 PIGCQ92535 297 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 DYRK2Q92630 601 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 PACRGQ96M98 296 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 GPR61Q9BZJ8 451 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 FGF23Q9GZV9 251 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 UBE2ZQ9H832 354 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 CCL28Q9NRJ3 127 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 MBNL3Q9NUK0 354 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 TRAV9-1A0A075B6T8 112 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 A8MWP6 167 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 C1QTNF9BB2RNN3 333 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 TRAPPC2LH3BP13 241 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 NTN3O00634 580 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 TMPRSS2O15393 492 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 ST8SIA5O15466 376 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 CST7O76096 145 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 OPN1LWP04000 364 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 ARR3P36575 388 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 RUNX1Q01196 453 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 MEF2BQ02080 365 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 EIF4EBP1Q13541 118 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 CEACAM16Q2WEN9 425 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 Q3ZCU0 254 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 HAPLN4Q86UW8 402 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF573Q86YE8 665 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 WDR31Q8NA23 367 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 OR10V1Q8NGI7 309 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 OR1P1Q8NH06 330 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 OR4X1Q8NH49 305 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 OR10J5Q8NHC4 309 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 OR5P3Q8WZ94 311 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 RAB1CQ92928 201 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 MTCH1Q9NZJ7 389 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 HSPB7Q9UBY9 170 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 WIPI2Q9Y4P8 454 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 REV3LO60673 3130 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 IGHV3-15A0A0B4J1V0 119 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 CTXND1A0A1B0GTU2 59 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 LRRC3CA6NJW4 275 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 IGKV1-39P01597 117 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 IGKV1D-39P04432 117 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 KLK3P07288 261 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 METTL15P1P0C7V9 234 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 B4GALT1P15291 398 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 IL2RGP31785 369 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 FOXL2P58012 376 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 PAX5Q02548 391 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 TMEM241Q24JQ0 296 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 SPIN3Q5JUX0 258 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 ACTL10Q5JWF8 245 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 CPEB3Q8NE35 698 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 TAF15Q92804 592 aaKnown RBP eCLIP4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 NDUFAF3Q9BU61 184 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 TMEM9BQ9NQ34 198 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 WNT16Q9UBV4 365 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 POLR3KQ9Y2Y1 108 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 C5orf42Q9H799 3197 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 A0A0G2JRQ6 117 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 FAM221AA4D161 298 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 MAP1LC3B2A6NCE7 125 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 FAM90A9PA6NNJ1 464 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 HRASP01112 189 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 SERPINE2P07093 398 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 GZMBP10144 247 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 RAB11AP62491 216 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 DMRTC1Q5HYR2 192 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 NCR3LG1Q68D85 454 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 GUSBP11Q6P575 273 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 DEFB119Q8N690 84 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 OR56B2PQ8NGI1 322 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 GPR87Q9BY21 358 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 MAP1LC3BQ9GZQ8 125 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF665Q9H7R5 613 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 PRDM6Q9NQX0 595 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 PSENENQ9NZ42 101 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 GNG13Q9P2W3 67 aa4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 CHD3Q12873 2000 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-203ENST00000412148 TRBV23-1A0A0A0MS06 115 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 TRAV24A0A0B4J272 114 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 PMS2P5A8MQ11 134 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 K7ESF4 209 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 MLNRO43193 412 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 IGKV1-5P01602 117 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 AMBPP02760 352 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 P04436 131 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 OMGP23515 440 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 PSMB3P49720 205 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 ASCL1P50553 236 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 ERVK11-1P61568 191 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 GNG3P63215 75 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms