RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CDC42EP2O14613 210 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 PPIHO43447 177 aaKnown RBP5.32□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF25P17030 456 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-203ENST00000409050 ORM2P19652 201 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 MAS1LP35410 378 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 RPS27P42677 84 aaKnown RBP5.32□□□□□ -1.56
SCN1A-203ENST00000409050 RND3P61587 244 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 TMEM78Q5T7P6 136 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 OR10AG1Q8NH19 301 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 ABHD3Q8WU67 409 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 RHNO1Q9BSD3 238 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 DUSP15Q9H1R2 295 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-203ENST00000409050 TUBA4BQ9H853 241 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 ASCL3Q9NQ33 180 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 FLRT3Q9NZU0 649 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 HCSTQ9UBK5 93 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 ING1Q9UK53 422 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-203ENST00000409050 OR51B2Q9Y5P1 312 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 A0A087WWC5 75 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 IGHV3-15A0A0B4J1V0 119 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 IGHV1OR15-9A0A0B4J2B8 117 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 SHISA7A6NL88 538 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 AHRRA9YTQ3 701 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 CD8AP01732 235 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 ASAH2BP0C7U1 165 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 RPL27AP46776 148 aaKnown RBP5.32□□□□□ -1.56
SCN1A-203ENST00000409050 CEBPDP49716 269 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-203ENST00000409050 TMEM91Q6ZNR0 172 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 TMEM252Q8N6L7 170 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 OR10J6PQ8NGY7 276 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 CCL4L1Q8NHW4 92 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 GATAD1Q8WUU5 269 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 PATE1Q8WXA2 126 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 HIST1H2BAQ96A08 127 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 FOXD3Q9UJU5 478 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-203ENST00000409050 A0A1W2PQM1 296 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 SLC25A17O43808 307 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 NMBP08949 121 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 MLF1P58340 268 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF79Q15937 498 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 PRDM14Q9GZV8 571 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 TREM2Q9NZC2 230 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 NKX2-6A6NCS4 301 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 LMX1BO60663 402 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 ADIPOQQ15848 244 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 C19orf54Q5BKX5 351 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 EBLN2Q6P2I7 272 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 C16orf82Q7Z2V1 217 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 AQP3Q92482 292 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 TBX15Q96SF7 602 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 CFHR5Q9BXR6 569 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 CCL28Q9NRJ3 127 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 TMEM30AQ9NV96 361 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 UFC1Q9Y3C8 167 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 WIPI2Q9Y4P8 454 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 NHSQ6T4R5 1651 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 A0A1B0GTL3 188 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 H7C1H1 209 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 SOCS1O15524 211 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 SS18L1O75177 396 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-203ENST00000409050 LHX8Q68G74 356 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 DNM1P46Q6ZS02 220 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 SGMS2Q8NHU3 365 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 NUDT8Q8WV74 236 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 APOBEC4Q8WW27 367 aaKnown RBP5.32□□□□□ -1.56
SCN1A-203ENST00000409050 ABHD14AQ9BUJ0 271 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 SRD5A3Q9H8P0 318 aa5.32□□□□□ -1.56
SCN1A-203ENST00000409050 CARHSP1Q9Y2V2 147 aaKnown RBP5.32□□□□□ -1.56
SCN1A-203ENST00000409050 MYO5AQ9Y4I1 1855 aaKnown RBP5.31□□□□□ -1.56
SCN1A-203ENST00000409050 PAPPAQ13219 1627 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 C8orf88P0DMB2 117 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 PTGDSP41222 190 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 LIMS1P48059 325 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF83P51522 516 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 GAB4Q2WGN9 574 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 SPANXN1Q5VSR9 72 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 WDR25Q64LD2 544 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-203ENST00000409050 FAM90A1Q86YD7 464 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 TMEM186Q96B77 213 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 DDA1Q9BW61 102 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 COA4Q9NYJ1 87 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 PEF1Q9UBV8 284 aaKnown RBP5.31□□□□□ -1.56
SCN1A-203ENST00000409050 SCN4AP35499 1836 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 PPIAL4EA0A075B759 164 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 A0A1B0GV72 72 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 PPIAL4DF5H284 164 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 PPIAL4FP0DN26 164 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 NAT1P18440 290 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 IER3P46695 156 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 GNG10P50151 68 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 IBA57Q5T440 356 aaKnown RBP5.31□□□□□ -1.56
SCN1A-203ENST00000409050 LAMTOR1Q6IAA8 161 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 SLX1AQ9BQ83 275 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 SPANXDQ9BXN6 97 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 PPIAL4AQ9Y536 164 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 PXMP4Q9Y6I8 212 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 IGHV5-51A0A0C4DH38 117 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF729A6NN14 1252 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-203ENST00000409050 C2CD4DB7Z1M9 353 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 PPM1DO15297 605 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms