RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SLC25A22Q9H936 323 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 RNF150Q9ULK6 438 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 LAMP3Q9UQV4 416 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 CLDN34H7C241 214 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 TUSC2O75896 110 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 PTBP3O95758 552 aaKnown RBP17.84■□□□□ 0.45
CTCF-202ENST00000401394 IGLV2-14P01704 120 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 Q0VFX4 171 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 COL19A1Q14993 1142 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 C3AR1Q16581 482 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 C16orf82Q7Z2V1 217 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 MRPL30Q8TCC3 161 aaKnown RBP17.84■□□□□ 0.45
CTCF-202ENST00000401394 CPT1CQ8TCG5 803 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 ATG101Q9BSB4 218 aa17.84■□□□□ 0.45
CTCF-202ENST00000401394 CBR3O75828 277 aa17.83■□□□□ 0.45
CTCF-202ENST00000401394 TMEM37Q8WXS4 190 aa17.83■□□□□ 0.45
CTCF-202ENST00000401394 PSENENQ9NZ42 101 aa17.83■□□□□ 0.45
CTCF-202ENST00000401394 IL36GQ9NZH8 169 aa17.83■□□□□ 0.45
CTCF-202ENST00000401394 TRAV24A0A0B4J272 114 aa17.83■□□□□ 0.44
CTCF-202ENST00000401394 AMBPP02760 352 aa17.83■□□□□ 0.44
CTCF-202ENST00000401394 OTX2P32243 289 aa17.83■□□□□ 0.44
CTCF-202ENST00000401394 SPINK14Q6IE38 97 aa17.83■□□□□ 0.44
CTCF-202ENST00000401394 OR5P3Q8WZ94 311 aa17.83■□□□□ 0.44
CTCF-202ENST00000401394 THOC3Q96J01 351 aaKnown RBP17.83■□□□□ 0.44
CTCF-202ENST00000401394 HES7Q9BYE0 225 aa17.83■□□□□ 0.44
CTCF-202ENST00000401394 OPA3Q9H6K4 179 aa17.83■□□□□ 0.44
CTCF-202ENST00000401394 NOSIPQ9Y314 301 aaKnown RBP17.83■□□□□ 0.44
CTCF-202ENST00000401394 BTBD17A6NE02 478 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 RPP25LQ8N5L8 163 aaKnown RBP17.82■□□□□ 0.44
CTCF-202ENST00000401394 ZNF525Q8N782 197 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 GTF3AQ92664 365 aaKnown RBP17.82■□□□□ 0.44
CTCF-202ENST00000401394 PCGF1Q9BSM1 259 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 KCNS2Q9ULS6 477 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 RBM7Q9Y580 266 aaKnown RBP17.82■□□□□ 0.44
CTCF-202ENST00000401394 KIAA1549Q9HCM3 1950 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 CD81P60033 236 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 IL24Q13007 206 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 KRTAP27-1Q3LI81 207 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 ZNF664Q8N3J9 261 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 SCGB1C1Q8TD33 95 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 SMDT1Q9H4I9 107 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 SOX15O60248 233 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 GZMBP10144 247 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 SRPXP78539 464 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 PMP22Q01453 160 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 ZNF324BQ6AW86 544 aaPredicted RBP17.82■□□□□ 0.44
CTCF-202ENST00000401394 LILRB2Q8N423 598 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 DNASE2BQ8WZ79 361 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 ATP23Q9Y6H3 246 aa17.82■□□□□ 0.44
CTCF-202ENST00000401394 LRRC3CA6NJW4 275 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 PATE3B3GLJ2 98 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 CYB5R3P00387 301 aaPredicted RBP17.81■□□□□ 0.44
CTCF-202ENST00000401394 CD33P20138 364 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 MLF1P58340 268 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 FGF12P61328 243 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 OR5D13Q8NGL4 314 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 SMIM7Q9BQ49 75 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 SH2D2AQ9NP31 389 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 SIRT7Q9NRC8 400 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 A0A1W2PPQ1 181 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 SMCO3A2RU48 225 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 MAP1LC3B2A6NCE7 125 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 CYB5R2Q6BCY4 276 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 MAP1LC3BQ9GZQ8 125 aa17.81■□□□□ 0.44
CTCF-202ENST00000401394 H0Y980 276 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 TRAPPC2LH3BP13 241 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 SIRPB1O00241 398 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 CEACAM1P13688 526 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 CEBPDP49716 269 aaPredicted RBP17.8■□□□□ 0.44
CTCF-202ENST00000401394 GNB2P62879 340 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 BAXQ07812 192 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 OR2V1Q8NHB1 315 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 OR10J5Q8NHC4 309 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 SYNGR2O43760 224 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 ZNF737O75373 536 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 GDF1P27539 372 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 EPHA8P29322 1005 aaPredicted RBP17.8■□□□□ 0.44
CTCF-202ENST00000401394 MDH2P40926 338 aaKnown RBP17.8■□□□□ 0.44
CTCF-202ENST00000401394 MRPL21Q7Z2W9 205 aaKnown RBP17.8■□□□□ 0.44
CTCF-202ENST00000401394 TUSC5Q8IXB3 177 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 FAM185AQ8N0U4 392 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 AGBL5Q8NDL9 886 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 OR10V1Q8NGI7 309 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 CLDN23Q96B33 292 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 C1QTNF5Q9BXJ0 243 aa17.8■□□□□ 0.44
CTCF-202ENST00000401394 CLEC18AA5D8T8 446 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 C9J4A7 227 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 USF2Q15853 346 aaPredicted RBP17.79■□□□□ 0.44
CTCF-202ENST00000401394 ZNF585BQ52M93 769 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 CLEC18CQ8NCF0 446 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 HIST1H2AAQ96QV6 131 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 CISD1Q9NZ45 108 aaKnown RBP17.79■□□□□ 0.44
CTCF-202ENST00000401394 RAMP3O60896 148 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 ACSM6Q6P461 480 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 LHX4Q969G2 390 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 REPIN1Q9BWE0 567 aaKnown RBP17.79■□□□□ 0.44
CTCF-202ENST00000401394 GPR87Q9BY21 358 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 OR2W1Q9Y3N9 320 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 PGPEP1LA6NFU8 196 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 IL18BPO95998 194 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms