RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 OPN3Q9H1Y3 402 aaPredicted RBP11.81□□□□□ -0.52
SNCA-204ENST00000394989 RCL1Q9Y2P8 373 aaKnown RBP11.81□□□□□ -0.52
SNCA-204ENST00000394989 NSG2Q9Y328 171 aa11.81□□□□□ -0.52
SNCA-204ENST00000394989 SVILO95425 2214 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 TNFSF12O43508 249 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 WDR1O75083 606 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 CDS2O95674 445 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 DMRTC2Q8IXT2 367 aaPredicted RBP11.8□□□□□ -0.52
SNCA-204ENST00000394989 SELENOHQ8IZQ5 122 aaKnown RBP11.8□□□□□ -0.52
SNCA-204ENST00000394989 ZNF610Q8N9Z0 462 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 ZNF383Q8NA42 475 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 C1orf162Q8NEQ5 155 aaPredicted RBP11.8□□□□□ -0.52
SNCA-204ENST00000394989 CABLES2Q9BTV7 478 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 PLEKHA2Q9HB19 425 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 OR1A1Q9P1Q5 309 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 FBXO7Q9Y3I1 522 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 GTF3C1Q12789 2109 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 GRPP07492 148 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 CECR9P0C854 216 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 SELLP14151 372 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 CAV2P51636 162 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 ZNF146Q15072 292 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 ZNF497Q6ZNH5 498 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 H1FOOQ8IZA3 346 aaPredicted RBP11.8□□□□□ -0.52
SNCA-204ENST00000394989 POLDIP2Q9Y2S7 368 aa11.8□□□□□ -0.52
SNCA-204ENST00000394989 PUS1Q9Y606 427 aaKnown RBP eCLIP11.8□□□□□ -0.52
SNCA-204ENST00000394989 AHRRA9YTQ3 701 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 CEACAM1P13688 526 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 EIF2S3P41091 472 aaKnown RBP11.79□□□□□ -0.52
SNCA-204ENST00000394989 C11orf53Q8IXP5 236 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 Q8IYB0 196 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 C11orf1Q9H5F2 150 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 ZNF71Q9NQZ8 489 aaPredicted RBP11.79□□□□□ -0.52
SNCA-204ENST00000394989 UBE2J1Q9Y385 318 aaPredicted RBP11.79□□□□□ -0.52
SNCA-204ENST00000394989 OR2W1Q9Y3N9 320 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 GPR37O15354 613 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 IGLV2-14P01704 120 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 GAPDHP04406 335 aaKnown RBP11.79□□□□□ -0.52
SNCA-204ENST00000394989 RTP5Q14D33 572 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 OR8G1Q15617 311 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 SSX9Q7RTT3 188 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 OR10J5Q8NHC4 309 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 IL1F10Q8WWZ1 152 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 SMIM8Q96KF7 97 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 WFDC1Q9HC57 220 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 TREM2Q9NZC2 230 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 FZR1Q9UM11 496 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 C1QTNF9BB2RNN3 333 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 ST8SIA3O43173 380 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 PGLYRP1O75594 196 aaPredicted RBP11.79□□□□□ -0.52
SNCA-204ENST00000394989 NXPH2O95156 264 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 IGLV1-44P01699 117 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 UCP1P25874 307 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 HOXC12P31275 282 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 CEBPDP49716 269 aaPredicted RBP11.79□□□□□ -0.52
SNCA-204ENST00000394989 SRPXP78539 464 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 RNF212Q495C1 297 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 IGFL3Q6UXB1 125 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 UNQ6494/PRO21346Q6UXR6 183 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 Q6ZR03 302 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 ZNF826PQ6ZT77 177 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 ZADH2Q8N4Q0 377 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 HES4Q9HCC6 221 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 ERRFI1Q9UJM3 462 aaPredicted RBP11.79□□□□□ -0.52
SNCA-204ENST00000394989 POMT1Q9Y6A1 747 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 GVINP1Q7Z2Y8 2422 aa11.79□□□□□ -0.52
SNCA-204ENST00000394989 ANKRD11Q6UB99 2663 aaPredicted RBP11.78□□□□□ -0.52
SNCA-204ENST00000394989 K7EM74 188 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 JTBO76095 146 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 RAB5AP20339 215 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 NMSQ5H8A3 153 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 PYY3Q5JQD4 70 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 ZNF695Q8IW36 515 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 OR8G5Q8NG78 346 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 UBALD1Q8TB05 177 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 TOLLIPQ9H0E2 274 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 OBP2BQ9NPH6 170 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 CEP250Q9BV73 2442 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 WNT9BO14905 357 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 ATXN7O15265 892 aaPredicted RBP11.78□□□□□ -0.52
SNCA-204ENST00000394989 ASCL1P50553 236 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 NHLH2Q02577 135 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 TESK1Q15569 626 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 PRR18Q8N4B5 295 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 RPRMLQ8N4K4 120 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 UBAC2Q8NBM4 344 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 MUC6Q6W4X9 2439 aa11.78□□□□□ -0.52
SNCA-204ENST00000394989 IGHV1-18A0A0C4DH31 117 aa11.77□□□□□ -0.52
SNCA-204ENST00000394989 MBD3L4A6NDZ8 208 aaPredicted RBP11.77□□□□□ -0.52
SNCA-204ENST00000394989 MBD3L3A6NE82 208 aaPredicted RBP11.77□□□□□ -0.52
SNCA-204ENST00000394989 MBD3L5A6NJ08 208 aaPredicted RBP11.77□□□□□ -0.52
SNCA-204ENST00000394989 ZNF727A8MUV8 499 aa11.77□□□□□ -0.52
SNCA-204ENST00000394989 WRBO00258 174 aa11.77□□□□□ -0.52
SNCA-204ENST00000394989 ADAM20O43506 726 aa11.77□□□□□ -0.52
SNCA-204ENST00000394989 PSPNO60542 156 aa11.77□□□□□ -0.52
SNCA-204ENST00000394989 MDH2P40926 338 aaKnown RBP11.77□□□□□ -0.52
SNCA-204ENST00000394989 P2RY1P47900 373 aa11.77□□□□□ -0.52
SNCA-204ENST00000394989 KIAA0141Q14154 515 aaPredicted RBP11.77□□□□□ -0.52
SNCA-204ENST00000394989 MBD3L2Q8NHZ7 208 aaPredicted RBP11.77□□□□□ -0.52
SNCA-204ENST00000394989 TMEM210A6NLX4 147 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms